2qip: Difference between revisions

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-[[Image:2qip.gif|left|200px]]
- {{Structure
+==Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633==
-|PDB= 2qip |SIZE=350|CAPTION= <scene name='initialview01'>2qip</scene>, resolution 1.48&Aring;
+<StructureSection load='2qip' size='340' side='right'caption='[[2qip]], [[Resolution|resolution]] 1.48&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+<table><tr><td colspan='2'>[[2qip]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QIP FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.48&#8491;</td></tr>
-|GENE= VPA0982 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 Vibrio parahaemolyticus RIMD 2210633])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01936 DUF88]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qip OCA], [https://pdbe.org/2qip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qip RCSB], [https://www.ebi.ac.uk/pdbsum/2qip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qip ProSAT], [https://www.topsan.org/Proteins/MCSG/2qip TOPSAN]</span></td></tr>
-|RELATEDENTRY=
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qip OCA], [http://www.ebi.ac.uk/pdbsum/2qip PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qip RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/Q9AF14_VIBPH Q9AF14_VIBPH]
+== Evolutionary Conservation ==
-'''Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633'''
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
-==About this Structure==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qi/2qip_consurf.spt"</scriptWhenChecked>
-QIP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QIP OCA].
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Single protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Vibrio parahaemolyticus rimd 2210633]]
+  </jmolCheckbox>
-[[Category: Duggan, E.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qip ConSurf].
-[[Category: Joachimiak, A.]]
+<div style="clear:both"></div>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+__TOC__
-[[Category: Moy, S.]]
+</StructureSection>
-[[Category: Tan, K.]]
+[[Category: Large Structures]]
-[[Category: apc85975]]
+[[Category: Vibrio parahaemolyticus RIMD 2210633]]
-[[Category: mcsg]]
+[[Category: Duggan E]]
-[[Category: midwest center for structural genomic]]
+[[Category: Joachimiak A]]
-[[Category: protein structure initiative]]
+[[Category: Moy S]]
-[[Category: psi-2]]
+[[Category: Tan K]]
-[[Category: structural genomic]]
-[[Category: vibrio parahaemolyticus rimd 2210633]]
-[[Category: vpa0982]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:49:40 2008''