2qip: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2qip.gif|left|200px]]<br /><applet load="2qip" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2qip, resolution 1.48&Aring;" />
-'''Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633'''<br />
-==About this Structure==
+==Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633==
-QIP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633] with <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QIP OCA].
+<StructureSection load='2qip' size='340' side='right'caption='[[2qip]], [[Resolution|resolution]] 1.48&Aring;' scene=''>
-[[Category: Single protein]]
+== Structural highlights ==
-[[Category: Vibrio parahaemolyticus rimd 2210633]]
+<table><tr><td colspan='2'>[[2qip]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QIP FirstGlance]. <br>
-[[Category: Duggan, E.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.48&#8491;</td></tr>
-[[Category: Joachimiak, A.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qip OCA], [https://pdbe.org/2qip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qip RCSB], [https://www.ebi.ac.uk/pdbsum/2qip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qip ProSAT], [https://www.topsan.org/Proteins/MCSG/2qip TOPSAN]</span></td></tr>
-[[Category: Moy, S.]]
+</table>
-[[Category: Tan, K.]]
+== Function ==
-[[Category: EDO]]
+[https://www.uniprot.org/uniprot/Q9AF14_VIBPH Q9AF14_VIBPH]
-[[Category: apc85975]]
+== Evolutionary Conservation ==
-[[Category: mcsg]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: midwest center for structural genomics]]
+Check<jmol>
-[[Category: protein structure initiative]]
+  <jmolCheckbox>
-[[Category: psi-2]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qi/2qip_consurf.spt"</scriptWhenChecked>
-[[Category: structural genomics]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: vibrio parahaemolyticus rimd 2210633]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: vpa0982]]
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qip ConSurf].
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:39:34 2008''
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Vibrio parahaemolyticus RIMD 2210633]]
+[[Category: Duggan E]]
+[[Category: Joachimiak A]]
+[[Category: Moy S]]
+[[Category: Tan K]]