2j5h: Difference between revisions

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-{{Seed}}
-[[Image:2j5h.png|left|200px]]
-<!--
+==NMR analysis of mouse CRIPTO CFC domain==
-The line below this paragraph, containing "STRUCTURE_2j5h", creates the "Structure Box" on the page.
+<StructureSection load='2j5h' size='340' side='right'caption='[[2j5h]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2j5h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J5H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J5H FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
-{{STRUCTURE_2j5h|  PDB=2j5h  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j5h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j5h OCA], [https://pdbe.org/2j5h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j5h RCSB], [https://www.ebi.ac.uk/pdbsum/2j5h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j5h ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/TDGF1_MOUSE TDGF1_MOUSE] GPI-anchored cell membrane protein involved in Nodal signaling. Cell-associated CRIPTO acts as a Nodal coreceptor in cis. Shedding of CRIPTO by Tmem8a modulates Nodal signaling by allowing soluble CRIPTO to act as a Nodal coreceptor on other cells. Could play a role in the determination of the epiblastic cells that subsequently give rise to the mesoderm.[UniProtKB:P13385]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j5/2j5h_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j5h ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+We report here for the first time the solution structures at pH 3 and pH 6 of the synthetic CFC domain of mouse Cripto and of the point mutated variant W107A that is unable to bind to the Alk4 Cripto receptor. NMR data confirm that the CFC domain has a C1-C4, C2-C6, C3-C5 disulfide pattern and show that structures are rather flexible and globally extended, with three noncanonical antiparallel strands. His104 and Trp107 side chains protrude from a protein edge and are strongly exposed to solvent, supporting previous evidence of direct involvement in receptor binding. On the opposite molecule side, several nonpolar residues are gathered, forming a large hydrophobic patch that supposedly acts as interface with the cell membrane or the adjacent EGF-like domain. A second hydrophilic patch surrounding His104 and Trp107 is present only in the wild type variant, suggesting a possible involvement in modulating Alk4 recognition.
-===NMR ANALYSIS OF MOUSE CRIPTO CFC DOMAIN===
+Solution structure of mouse Cripto CFC domain and its inactive variant Trp107Ala.,Calvanese L, Saporito A, Marasco D, D'Auria G, Minchiotti G, Pedone C, Paolillo L, Falcigno L, Ruvo M J Med Chem. 2006 Nov 30;49(24):7054-62. PMID:17125258<ref>PMID:17125258</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2j5h" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_17125258}}, adds the Publication Abstract to the page
+*[[Epidermal growth factor|Epidermal growth factor]]
-(as it appears on PubMed at http://www.pubmed.gov), where 17125258 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_17125258}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-J5H is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J5H OCA].
+[[Category: Mus musculus]]
+[[Category: Calvanese L]]
-==Reference==
+[[Category: D'Auria G]]
-<ref group="xtra">PMID:17125258</ref><references group="xtra"/>
+[[Category: Falcigno L]]
-[[Category: Auria, G D.]]
+[[Category: Marasco D]]
-[[Category: Calvanese, L.]]
+[[Category: Minchiotti G]]
-[[Category: Falcigno, L.]]
+[[Category: Paolillo L]]
-[[Category: Marasco, D.]]
+[[Category: Pedone C]]
-[[Category: Minchiotti, G.]]
+[[Category: Ruvo M]]
-[[Category: Paolillo, L.]]
+[[Category: Saporito A]]
-[[Category: Pedone, C.]]
-[[Category: Ruvo, M.]]
-[[Category: Saporito, A.]]
-[[Category: Cripto]]
-[[Category: Cysteine-rich domain]]
-[[Category: Egf-cfc family]]
-[[Category: Growth factor]]
-[[Category: Hormone/growth factor complex]]
-[[Category: Tumour progression]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 07:47:07 2009''