2j4w: Difference between revisions

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-==STRUCTURE OF A PLASMODIUM VIVAX APICAL MEMBRANE ANTIGEN 1-FAB F8.12.19 COMPLEX==
-<StructureSection load='2j4w' size='340' side='right' caption='[[2j4w]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+==Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex==
+<StructureSection load='2j4w' size='340' side='right'caption='[[2j4w]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2j4w]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J4W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2J4W FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2j4w]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J4W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J4W FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w81|1w81]], [[1w8k|1w8k]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2j4w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j4w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2j4w RCSB], [http://www.ebi.ac.uk/pdbsum/2j4w PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j4w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j4w OCA], [https://pdbe.org/2j4w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j4w RCSB], [https://www.ebi.ac.uk/pdbsum/2j4w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j4w ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9TY14_PLAVI Q9TY14_PLAVI]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j4/2j4w_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j4/2j4w_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j4w ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 25: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2j4w" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Monoclonal Antibody|Monoclonal Antibody]]
+*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
 [[Category: Mus musculus]]
 [[Category: Plasmodium vivax]]
-[[Category: Bentley, G A]]
+[[Category: Bentley GA]]
-[[Category: Faure, G]]
+[[Category: Faure G]]
-[[Category: Igonet, S]]
+[[Category: Igonet S]]
-[[Category: Kocken, C H.M]]
+[[Category: Kocken CHM]]
-[[Category: Normand, B Vulliez-Le]]
+[[Category: Riottot MM]]
-[[Category: Riottot, M M]]
+[[Category: Thomas AW]]
-[[Category: Thomas, A W]]
+[[Category: Vulliez-Le Normand B]]
-[[Category: Antibody cross-reactivity]]
-[[Category: Apical membrane antigen 1]]
-[[Category: Hypothetical protein]]
-[[Category: Immune system]]
-[[Category: Immunoglobulin c region]]
-[[Category: Immunoglobulin domain]]
-[[Category: Malaria vaccine candidate]]
-[[Category: Membrane]]
-[[Category: Surface active protein]]
-[[Category: Transmembrane]]