2j4u: Difference between revisions

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 ==E.coli OmpC - camel Lactoferrin complex==
-<StructureSection load='2j4u' size='340' side='right' caption='[[2j4u]], [[Resolution|resolution]] 2.99&Aring;' scene=''>
+<StructureSection load='2j4u' size='340' side='right'caption='[[2j4u]], [[Resolution|resolution]] 2.99&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2j4u]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Camelus_dromedarius Camelus dromedarius] and [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J4U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2J4U FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2j4u]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Camelus_dromedarius Camelus dromedarius] and [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J4U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J4U FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2j1n|2j1n]], [[1dtz|1dtz]], [[1i6q|1i6q]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.99&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2j4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j4u OCA], [http://pdbe.org/2j4u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2j4u RCSB], [http://www.ebi.ac.uk/pdbsum/2j4u PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j4u OCA], [https://pdbe.org/2j4u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j4u RCSB], [https://www.ebi.ac.uk/pdbsum/2j4u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j4u ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/OMPC_ECOLI OMPC_ECOLI]] Forms pores that allow passive diffusion of small molecules across the outer membrane. [[http://www.uniprot.org/uniprot/TRFL_CAMDR TRFL_CAMDR]] Transferrins are iron binding transport proteins which can bind two Fe(3+) ions in association with the binding of an anion, usually bicarbonate (By similarity).  The lactotransferrin transferrin-like domain 1 functions as a serine protease of the peptidase S60 family that cuts arginine rich regions. This function contributes to the antimicrobial activity (By similarity).
+[https://www.uniprot.org/uniprot/OMPC_ECOLI OMPC_ECOLI] Forms pores that allow passive diffusion of small molecules across the outer membrane.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j4/2j4u_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j4/2j4u_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j4u ConSurf].
 <div style="clear:both"></div>
 ==See Also==
 *[[Lactoferrin|Lactoferrin]]
-*[[Porin|Porin]]
+*[[Porin 3D structures|Porin 3D structures]]
 __TOC__
 </StructureSection>
 [[Category: Camelus dromedarius]]
 [[Category: Escherichia coli]]
-[[Category: Acharya, R K]]
+[[Category: Large Structures]]
-[[Category: Baalaji, S]]
+[[Category: Acharya RK]]
-[[Category: Krishnaswamy, S]]
+[[Category: Baalaji S]]
-[[Category: Singh, T P]]
+[[Category: Krishnaswamy S]]
-[[Category: Antiacterial peptide]]
+[[Category: Singh TP]]
-[[Category: Complex]]
-[[Category: Glycoprotein]]
-[[Category: Hydrolase]]
-[[Category: Ion transport]]
-[[Category: Iron]]
-[[Category: Iron transport]]
-[[Category: Lactoferrin]]
-[[Category: Membrane protein]]
-[[Category: Membrane protein-hydrolase complex]]
-[[Category: Membrane protein/hydrolase]]
-[[Category: Metal-binding]]
-[[Category: Ompc]]
-[[Category: Porin]]
-[[Category: Protease]]
-[[Category: Serine protease]]
-[[Category: Transport]]