2fgz: Difference between revisions

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OCA

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 ==Crystal Structure Analysis of apo pullulanase from Klebsiella pneumoniae==
-<StructureSection load='2fgz' size='340' side='right' caption='[[2fgz]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
+<StructureSection load='2fgz' size='340' side='right'caption='[[2fgz]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2fgz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_aerogenes Enterobacter aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FGZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FGZ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2fgz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FGZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FGZ FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2fh6|2fh6]], [[2fh8|2fh8]], [[2fhb|2fhb]], [[2fhc|2fhc]], [[2fhf|2fhf]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fgz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fgz OCA], [https://pdbe.org/2fgz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fgz RCSB], [https://www.ebi.ac.uk/pdbsum/2fgz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fgz ProSAT]</span></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fgz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fgz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fgz RCSB], [http://www.ebi.ac.uk/pdbsum/2fgz PDBsum]</span></td></tr>
+</table>
-<table>
+== Function ==
+[https://www.uniprot.org/uniprot/W9BQ28_KLEPN W9BQ28_KLEPN]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fg/2fgz_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fg/2fgz_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fgz ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 26: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2fgz" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Amylase|Amylase]]
+*[[Amylase 3D structures|Amylase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Enterobacter aerogenes]]
+[[Category: Klebsiella pneumoniae]]
-[[Category: Pullulanase]]
+[[Category: Large Structures]]
-[[Category: Demirkan-Sarikaya, E.]]
+[[Category: Demirkan-Sarikaya E]]
-[[Category: Iwamoto, H.]]
+[[Category: Iwamoto H]]
-[[Category: Katsuya, Y.]]
+[[Category: Katsuya Y]]
-[[Category: Malle, D.]]
+[[Category: Malle D]]
-[[Category: Mikami, B.]]
+[[Category: Mikami B]]
-[[Category: Yoon, H J.]]
+[[Category: Yoon H-J]]
-[[Category: Alpha-amylase-family]]
-[[Category: Beta-alpha-barrel]]
-[[Category: Hydrolase]]
-[[Category: Multiple domain]]