1vyt: Difference between revisions

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-[[Image:1vyt.png|left|200px]]
-<!--
+==beta3 subunit complexed with aid==
-The line below this paragraph, containing "STRUCTURE_1vyt", creates the "Structure Box" on the page.
+<StructureSection load='1vyt' size='340' side='right'caption='[[1vyt]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1vyt]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VYT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VYT FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vyt OCA], [https://pdbe.org/1vyt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vyt RCSB], [https://www.ebi.ac.uk/pdbsum/1vyt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vyt ProSAT]</span></td></tr>
-{{STRUCTURE_1vyt|  PDB=1vyt  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CACB3_RAT CACB3_RAT] The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/1vyt_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vyt ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+High-voltage-activated Ca2+ channels are essential for diverse biological processes. They are composed of four or five subunits, including alpha1, alpha2-delta, beta and gamma (ref. 1). Their expression and function are critically dependent on the beta-subunit, which transports alpha1 to the surface membrane and regulates diverse channel properties. It is believed that the beta-subunit interacts with alpha1 primarily through the beta-interaction domain (BID), which binds directly to the alpha-interaction domain (AID) of alpha1; however, the molecular mechanism of the alpha1-beta interaction is largely unclear. Here we report the crystal structures of the conserved core region of beta3, alone and in complex with AID, and of beta4 alone. The structures show that the beta-subunit core contains two interacting domains: a Src homology 3 (SH3) domain and a guanylate kinase (GK) domain. The AID binds to a hydrophobic groove in the GK domain through extensive interactions, conferring extremely high affinity between alpha1 and beta-subunits. The BID is essential both for the structural integrity of and for bridging the SH3 and GK domains, but it does not participate directly in binding alpha1. The presence of multiple protein-interacting modules in the beta-subunit opens a new dimension to its function as a multi-functional protein.
-===BETA3 SUBUNIT COMPLEXED WITH AID===
+Structural basis of the alpha1-beta subunit interaction of voltage-gated Ca2+ channels.,Chen YH, Li MH, Zhang Y, He LL, Yamada Y, Fitzmaurice A, Shen Y, Zhang H, Tong L, Yang J Nature. 2004 Jun 10;429(6992):675-80. Epub 2004 May 30. PMID:15170217<ref>PMID:15170217</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<!--
+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_15170217}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 1vyt" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 15170217 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_15170217}}
-==About this Structure==
-[[1vyt]] is a 4 chain structure of [[Ion channels]] and [[Ion channels (Part II)]] with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VYT OCA].
 ==See Also==
-*[[Ion channels]]
+*[[Ion channels 3D structures|Ion channels 3D structures]]
-*[[Ion channels (Part II)]]
+== References ==
+<references/>
-==Reference==
+__TOC__
-<ref group="xtra">PMID:15170217</ref><references group="xtra"/>
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Rattus norvegicus]]
-[[Category: Chen, Y H.]]
+[[Category: Chen Y-H]]
-[[Category: Fitzmaurice, A.]]
+[[Category: Fitzmaurice A]]
-[[Category: He, L L.]]
+[[Category: He L-L]]
-[[Category: Li, M H.]]
+[[Category: Li M-H]]
-[[Category: Tong, L.]]
+[[Category: Tong L]]
-[[Category: Yamada, Y.]]
+[[Category: Yamada Y]]
-[[Category: Yang, J.]]
+[[Category: Yang J]]
-[[Category: Yang, S.]]
+[[Category: Yang S]]
-[[Category: Zhang, H.]]
+[[Category: Zhang H]]
-[[Category: Zhang, Y.]]
+[[Category: Zhang Y]]
-[[Category: Aid doamin]]
-[[Category: Calcium channel beta subunit]]
-[[Category: Ion transport]]
-[[Category: Ion transport/complex]]
-[[Category: Ionic channel]]
-[[Category: Sh3 domain]]
-[[Category: Transport protein]]
-[[Category: Voltage-gated channel]]