1v9s: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
New page: left|200px<br /><applet load="1v9s" size="450" color="white" frame="true" align="right" spinBox="true" caption="1v9s, resolution 2.1Å" /> '''Crystal structure of ...
 
No edit summary
 
(15 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1v9s.gif|left|200px]]<br /><applet load="1v9s" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1v9s, resolution 2.1&Aring;" />
'''Crystal structure of TT0130 protein from Thermus thermophilus HB8'''<br />


==About this Structure==
==Crystal structure of TT0130 protein from Thermus thermophilus HB8==
1V9S is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with SO4 as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Uracil_phosphoribosyltransferase Uracil phosphoribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.9 2.4.2.9] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1V9S OCA].
<StructureSection load='1v9s' size='340' side='right'caption='[[1v9s]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Thermus thermophilus]]
<table><tr><td colspan='2'>[[1v9s]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V9S FirstGlance]. <br>
[[Category: Uracil phosphoribosyltransferase]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
[[Category: Kunishima, N.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
[[Category: Lokanath, N.K.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v9s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9s OCA], [https://pdbe.org/1v9s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v9s RCSB], [https://www.ebi.ac.uk/pdbsum/1v9s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v9s ProSAT], [https://www.topsan.org/Proteins/RSGI/1v9s TOPSAN]</span></td></tr>
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
</table>
[[Category: SO4]]
== Function ==
[[Category: oligomerization]]
[https://www.uniprot.org/uniprot/UPP_THET2 UPP_THET2] Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate (By similarity).
[[Category: pyrimidine salvage]]
== Evolutionary Conservation ==
[[Category: riken structural genomics/proteomics initiative]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: rsgi]]
Check<jmol>
[[Category: structural genomics]]
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v9/1v9s_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v9s ConSurf].
<div style="clear:both"></div>


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 04:32:01 2007''
==See Also==
*[[Phosphoribosyltransferase 3D structures|Phosphoribosyltransferase 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus HB8]]
[[Category: Kunishima N]]
[[Category: Lokanath NK]]

Latest revision as of 07:57, 17 October 2024

Crystal structure of TT0130 protein from Thermus thermophilus HB8Crystal structure of TT0130 protein from Thermus thermophilus HB8

Structural highlights

1v9s is a 4 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

UPP_THET2 Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1v9s, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=1v9s&oldid=4191291"