1q4r: Difference between revisions

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-{{Seed}}
-[[Image:1q4r.png|left|200px]]
-<!--
+==Gene Product of At3g17210 from Arabidopsis Thaliana==
-The line below this paragraph, containing "STRUCTURE_1q4r", creates the "Structure Box" on the page.
+<StructureSection load='1q4r' size='340' side='right'caption='[[1q4r]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1q4r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q4R FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_1q4r|  PDB=1q4r  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [https://pdbe.org/1q4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [https://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q4r ProSAT], [https://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>
+</table>
-===Gene Product of At3g17210 from Arabidopsis Thaliana===
+== Function ==
+[https://www.uniprot.org/uniprot/POP3_ARATH POP3_ARATH]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-Q4R is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA].
+Check<jmol>
+  <jmolCheckbox>
-==Reference==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q4/1q4r_consurf.spt"</scriptWhenChecked>
-Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana., Bingman CA, Johnson KA, Peterson FC, Frederick RO, Zhao Q, Thao S, Fox BG, Volkman BF, Jeon WB, Smith DW, Newman CS, Ulrich EL, Hegeman A, Sussman MR, Markley JL, Phillips GN Jr, Proteins. 2004 Oct 1;57(1):218-20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15326607 15326607]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q4r ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Arabidopsis thaliana]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Bingman, C A.]]
+[[Category: Bingman CA]]
-[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
+[[Category: Johnson KA]]
-[[Category: Johnson, K A.]]
+[[Category: Phillips Jr GN]]
-[[Category: Jr., G N.Phillips.]]
+[[Category: Smith DW]]
-[[Category: Smith, D W.]]
-[[Category: Arabidopsis thaliana]]
-[[Category: Center for eukaryotic structural genomic]]
-[[Category: Cesg]]
-[[Category: Protein structure initiative]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul  6 12:01:56 2008''