Proteopedia:I3DC: Difference between revisions
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# [[Journal:Acta Cryst D:S2059798324007733|Structural analysis of a ligand-triggered intermolecular disulfide switch in a major latex protein from opium poppy]], Samuel C. Carr, Peter J. Facchini, Kenneth K.S. Ng | # [[Journal:Acta Cryst D:S2059798324007733|Structural analysis of a ligand-triggered intermolecular disulfide switch in a major latex protein from opium poppy]], Samuel C. Carr, Peter J. Facchini, Kenneth K.S. Ng | ||
# [[Journal:Acta Cryst D:S2059798324008246|Comparison of two crystal polymorphs of NowGFP reveals a new conformational state trapped by crystal packing]], Dr Jin Kyun Kim | # [[Journal:Acta Cryst D:S2059798324008246|Comparison of two crystal polymorphs of NowGFP reveals a new conformational state trapped by crystal packing]], Dr Jin Kyun Kim | ||
# [[Journal:Acta Cryst D:S2059798324008210|Microcrystal electron diffraction structure of Toll-like-receptor 2 TIR domain-nucleated MyD88 TIR domain higher-order assembly]], Li, Pacoste, Gu, Thygesen, Stacey, Ve, Kobe, Xu, & Nanson | |||
===Acta Cryst F ''Acta Crystallographica Section F''=== | ===Acta Cryst F ''Acta Crystallographica Section F''=== | ||
https://proteopedia.org/logos/small/Acta_Cryst_F.png | https://proteopedia.org/logos/small/Acta_Cryst_F.png | ||
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# [[Journal:Acta Cryst F:S2053230X24003911|Structural and biochemical characterization of the M405S variant of ''Desulfovibrio vulgaris'' formate dehydrogenase]], Guilherme Vilela-Alves, Rita Rebelo Manuel, Neide Pedrosa, Ines A. Cardoso Pereira, Maria Joao Romao and Cristiano Mota | # [[Journal:Acta Cryst F:S2053230X24003911|Structural and biochemical characterization of the M405S variant of ''Desulfovibrio vulgaris'' formate dehydrogenase]], Guilherme Vilela-Alves, Rita Rebelo Manuel, Neide Pedrosa, Ines A. Cardoso Pereira, Maria Joao Romao and Cristiano Mota | ||
# [[Journal:Acta Cryst F:S2053230X24004655|Cryo-EM structure and functional analysis of chromatin remodeler RSF]], Jiale Zhang, Heyu Zhao, Binqian Zou, Huadong Li, Shuqi Dong, Jiali Guan, Chi Wang, Weijie Li, Yutong Liu, Yingying Chen, Nadia Rasheed and Jun He | # [[Journal:Acta Cryst F:S2053230X24004655|Cryo-EM structure and functional analysis of chromatin remodeler RSF]], Jiale Zhang, Heyu Zhao, Binqian Zou, Huadong Li, Shuqi Dong, Jiali Guan, Chi Wang, Weijie Li, Yutong Liu, Yingying Chen, Nadia Rasheed and Jun He | ||
# [[Journal:Acta Cryst F:S2053230X24008604|Ternary structure of ''Plasmodium vivax N''-myristoyltransferase with myristoyl-CoA and inhibitor IMP-0001173]], Bolling, Mendez, Taylor, Makumire, Reers, Zigweid, Subramanian, Dranow, Staker, Edwards, Tate, Bell, Myler, Asojo & Chakafana | |||
# [[Journal:Acta Cryst F:S2053230X24010094|Human TGFβR1 in complex with kinase inhibitor SB505124]], Jhon A. Rodriguez Buitrago, Marene Landstrom, Magnus Wolf-Watz | |||
# [[Journal:Acta Cryst F:S2053230X24011099|Crystal structure of glutamyl-tRNA synthetase from H''elicobacter pylori'']], Dr Oluwatoyin A. Asojo | |||
===Angew Chem Int Ed ''''=== | ===Angew Chem Int Ed ''''=== | ||
# [[Journal:Angew Chem Int Ed:1| Fine tuning of chlorophyll spectra by protein-induced ring deformation ]], Dominika Bednarczyk, Orly Dym, Yoav Peleg, Vadivel Prabahar, and Dror Noy | # [[Journal:Angew Chem Int Ed:1| Fine tuning of chlorophyll spectra by protein-induced ring deformation ]], Dominika Bednarczyk, Orly Dym, Yoav Peleg, Vadivel Prabahar, and Dror Noy | ||
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# [[Journal:IUCrJ:S2052252524001969|The ABC Toxin Complex from ''Yersinia entomophaga'' Can Package a Cytotoxin Expressed from an âOrphanâ Genetic Locus: the Structures of Both the RHS Shell and its Cargo.]], Jason N. Busby, Sarah Trevelyan, Cassandra L. Pegg, Edward D. Kerr, Benjamin L. Schulz, Irene Chassagnon, Michael J. Landsberg, Mitchell K. Weston, Mark R. H. Hurst, and J. Shaun Lott | # [[Journal:IUCrJ:S2052252524001969|The ABC Toxin Complex from ''Yersinia entomophaga'' Can Package a Cytotoxin Expressed from an âOrphanâ Genetic Locus: the Structures of Both the RHS Shell and its Cargo.]], Jason N. Busby, Sarah Trevelyan, Cassandra L. Pegg, Edward D. Kerr, Benjamin L. Schulz, Irene Chassagnon, Michael J. Landsberg, Mitchell K. Weston, Mark R. H. Hurst, and J. Shaun Lott | ||
# [[Journal:IUCrJ:S2052252524004627|From X-ray crystallographic structure to intrinsic thermodynamics of proteinâligand binding using carbonic anhydrase isozymes as a model system]], Vaida Paketuryte-Latve, Alexey Smirnov, Elena Manakova, Lina Baranauskiene, Vytautas Petrauskas, Asta Zubriene, Jurgita Matuliene, Virginija Dudutiene, Edita Capkauskaite, Audrius Zaksauskas, Janis Leitans, Saulius Grazulis, Kaspars Tars and Daumantas Matulis | # [[Journal:IUCrJ:S2052252524004627|From X-ray crystallographic structure to intrinsic thermodynamics of proteinâligand binding using carbonic anhydrase isozymes as a model system]], Vaida Paketuryte-Latve, Alexey Smirnov, Elena Manakova, Lina Baranauskiene, Vytautas Petrauskas, Asta Zubriene, Jurgita Matuliene, Virginija Dudutiene, Edita Capkauskaite, Audrius Zaksauskas, Janis Leitans, Saulius Grazulis, Kaspars Tars and Daumantas Matulis | ||
# [[Journal:IUCrJ:S2052252524010170|Crystal structure of a bacterial photoactivated adenylate cyclase determined at room temperature by serial femtosecond crystallography]], Kapetanaki SM, Coquelle N, von Stetten D, Byrdin M, Rios-Santacruz R, Bean R, Bielecki J, Boudjelida M, Fekete Z, Grime GW, Han H, Hatton C, Kantamneni S, Kharitonov K, Kim C, Kloos M, Koua FHM, de Diego Martinez I, Melo D, Rane L, Round A, Round E, Sarma A, Schubert R, Schulz J, Sikorski M, Vakili M, Valerio J, Vitas J, de Wijn R, Wrona A, Zala N, Pearson A, Dörner K, Schirò G, Garman EF, Lukács A, Weik M. | |||
===JBIC ''Journal of Biological Inorganic Chemistry''=== | ===JBIC ''Journal of Biological Inorganic Chemistry''=== | ||
https://proteopedia.org/logos/small/JBIC.png | https://proteopedia.org/logos/small/JBIC.png | ||
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# [[Journal:Protein Science:2|The Impact of Crystallization Conditions on Structure-Based Drug Design: a Case Study on the Methylene Blue/Acetylcholinesterase Complex]], Orly Dym, Wanling Song, Clifford Felder, Esther Roth, Valery Shnyrov, Yacov, Ashani, Yechun Xu, Robbie P. Joosten, Lev Weiner, Joel L. Sussman, and Israel Silman | # [[Journal:Protein Science:2|The Impact of Crystallization Conditions on Structure-Based Drug Design: a Case Study on the Methylene Blue/Acetylcholinesterase Complex]], Orly Dym, Wanling Song, Clifford Felder, Esther Roth, Valery Shnyrov, Yacov, Ashani, Yechun Xu, Robbie P. Joosten, Lev Weiner, Joel L. Sussman, and Israel Silman | ||
# [[Journal:Protein Science:3|''Torpedo californica'' acetylcholinesterase is stabilized by binding of a divalent metal ion to a novel and versatile 4D motif]], Israel Silman, Valery L. Shnyrov, Yacov Ashani, Esther Roth, Anne Nicolas, Joel L Sussman, and Lev Weiner | # [[Journal:Protein Science:3|''Torpedo californica'' acetylcholinesterase is stabilized by binding of a divalent metal ion to a novel and versatile 4D motif]], Israel Silman, Valery L. Shnyrov, Yacov Ashani, Esther Roth, Anne Nicolas, Joel L Sussman, and Lev Weiner | ||
# [[Journal:Protein Science:4|Why is binding of a divalent metal cation to a structural motif containing four carboxylate residues not accompanied by a conformational change?]], Lushchekina, Weiner, Ashani, Emrizal, Firdaus-Raih, Silman & Sussman | |||
===Proteins ''''=== | ===Proteins ''''=== | ||
https://proteopedia.org/logos/small/Proteins.png | https://proteopedia.org/logos/small/Proteins.png | ||
# [[Journal:Proteins:2| Protein Stability and ''in Vivo'' Concentration of Missense Mutations in Phenylalanine Hydroxylase ]], Zhen Shi, Jenn Sellers, and John Moult | # [[Journal:Proteins:2| Protein Stability and ''in Vivo'' Concentration of Missense Mutations in Phenylalanine Hydroxylase ]], Zhen Shi, Jenn Sellers, and John Moult | ||
# [[Journal:Proteins:3| Do | # [[Journal:Proteins:3| Do ''Newly Born'' Orphan Proteins Resemble ''Never Born'' Proteins? A Study Using Three Deep Learning Algorithms ]], Jing Liu, Rongqing Yuan, Wei Shao, Jitong Wang, Israel Silman and Joel Sussman | ||
===Science === | ===Science === | ||
# [[Journal:Science:1| Structural basis of transcription activation ]], Yu Feng, Yu Zhang, Richard H. Ebright | # [[Journal:Science:1| Structural basis of transcription activation ]], Yu Feng, Yu Zhang, Richard H. Ebright | ||