3vr4: Difference between revisions

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 ==Crystal structure of Enterococcus hirae V1-ATPase [eV1]==
-<StructureSection load='3vr4' size='340' side='right' caption='[[3vr4]], [[Resolution|resolution]] 2.17&Aring;' scene=''>
+<StructureSection load='3vr4' size='340' side='right'caption='[[3vr4]], [[Resolution|resolution]] 2.17&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3vr4]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VR4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VR4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3vr4]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VR4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VR4 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=B3P:2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>B3P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.172&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B3P:2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>B3P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vr2|3vr2]], [[3vr3|3vr3]], [[3vr5|3vr5]], [[3vr6|3vr6]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vr4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vr4 OCA], [https://pdbe.org/3vr4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vr4 RCSB], [https://www.ebi.ac.uk/pdbsum/3vr4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vr4 ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ntpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1354 Enterococcus hirae]), ntpB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1354 Enterococcus hirae]), ntpD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1354 Enterococcus hirae]), ntpG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1354 Enterococcus hirae])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sodium-transporting_two-sector_ATPase Sodium-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.15 3.6.3.15] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vr4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vr4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vr4 RCSB], [http://www.ebi.ac.uk/pdbsum/3vr4 PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/NTPG_ENTHR NTPG_ENTHR]] Involved in ATP-driven sodium extrusion.
+[https://www.uniprot.org/uniprot/NTPG_ENTHA NTPG_ENTHA] Involved in ATP-driven sodium extrusion.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 20: / Line 18: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3vr4" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[ATPase|ATPase]]
+*[[ATPase 3D structures|ATPase 3D structures]]
 == References ==
 <references/>
@@ Line 28: / Line 27: @@
 </StructureSection>
 [[Category: Enterococcus hirae]]
-[[Category: Sodium-transporting two-sector ATPase]]
+[[Category: Large Structures]]
-[[Category: Arai, S]]
+[[Category: Arai S]]
-[[Category: Ishizuka-Katsura, Y]]
+[[Category: Ishizuka-Katsura Y]]
-[[Category: Iwata, S]]
+[[Category: Iwata S]]
-[[Category: Kakinuma, Y]]
+[[Category: Kakinuma Y]]
-[[Category: Mizutani, K]]
+[[Category: Mizutani K]]
-[[Category: Murata, T]]
+[[Category: Murata T]]
-[[Category: Ohsawa, N]]
+[[Category: Ohsawa N]]
-[[Category: Saijo, S]]
+[[Category: Saijo S]]
-[[Category: Shirouzu, M]]
+[[Category: Shirouzu M]]
-[[Category: Suzuki, K]]
+[[Category: Suzuki K]]
-[[Category: Terada, T]]
+[[Category: Terada T]]
-[[Category: Yamato, I]]
+[[Category: Yamato I]]
-[[Category: Yokoyama, S]]
+[[Category: Yokoyama S]]
-[[Category: Atp binding]]
-[[Category: Hydrolase]]
-[[Category: P-loop]]
-[[Category: Rotary motor]]
-[[Category: V-atpase]]