3k1k: Difference between revisions
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
==Green fluorescent protein bound to enhancer nanobody== | ==Green fluorescent protein bound to enhancer nanobody== | ||
<StructureSection load='3k1k' size='340' side='right' caption='[[3k1k]], [[Resolution|resolution]] 2.15Å' scene=''> | <StructureSection load='3k1k' size='340' side='right'caption='[[3k1k]], [[Resolution|resolution]] 2.15Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3k1k]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K1K OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[3k1k]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria] and [https://en.wikipedia.org/wiki/Camelus_dromedarius Camelus dromedarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K1K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K1K FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GYS:[(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>GYS</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k1k OCA], [https://pdbe.org/3k1k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k1k RCSB], [https://www.ebi.ac.uk/pdbsum/3k1k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k1k ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k1/3k1k_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k1/3k1k_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| Line 31: | Line 31: | ||
==See Also== | ==See Also== | ||
*[[Green Fluorescent Protein|Green Fluorescent Protein]] | *[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Cardoso | [[Category: Aequorea victoria]] | ||
[[Category: Cui | [[Category: Camelus dromedarius]] | ||
[[Category: Delucci | [[Category: Large Structures]] | ||
[[Category: Frauer | [[Category: Cardoso MC]] | ||
[[Category: Helma | [[Category: Cui S]] | ||
[[Category: Hopfner | [[Category: Delucci CC]] | ||
[[Category: Karcher | [[Category: Frauer C]] | ||
[[Category: Kirchhofer | [[Category: Helma J]] | ||
[[Category: Leonhardt | [[Category: Hopfner K-P]] | ||
[[Category: Muyldermans | [[Category: Karcher A]] | ||
[[Category: Pellis | [[Category: Kirchhofer A]] | ||
[[Category: Rothbauer | [[Category: Leonhardt H]] | ||
[[Category: Schmidthals | [[Category: Muyldermans S]] | ||
[[Category: Pellis M]] | |||
[[Category: Rothbauer U]] | |||
[[Category: Schmidthals K]] | |||