3f3k: Difference between revisions

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 ==The structure of uncharacterized protein YKR043C from Saccharomyces cerevisiae.==
-<StructureSection load='3f3k' size='340' side='right' caption='[[3f3k]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
+<StructureSection load='3f3k' size='340' side='right'caption='[[3f3k]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3f3k]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F3K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3F3K FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3f3k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F3K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F3K FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YKR043C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f3k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f3k OCA], [https://pdbe.org/3f3k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f3k RCSB], [https://www.ebi.ac.uk/pdbsum/3f3k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f3k ProSAT], [https://www.topsan.org/Proteins/MCSG/3f3k TOPSAN]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f3k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f3k OCA], [http://pdbe.org/3f3k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3f3k RCSB], [http://www.ebi.ac.uk/pdbsum/3f3k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3f3k ProSAT], [http://www.topsan.org/Proteins/MCSG/3f3k TOPSAN]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/SHB17_YEAST SHB17_YEAST]] Sedoheptulose 1,7-bisphosphatase involved in riboneogenesis. Dephosphorylates sedoheptulose 1,7-bisphosphate (SBP), which is converted via the non-oxidative pentose phosphate pathway to ribose-5-phosphate. Has a fructose 1,6-bisphosphatase activity in vitro, but this is probably not biologically relevant, since deletion does not affect fructose 1,6-biphosphate (FBP) levels.<ref>PMID:21663798</ref>
+[https://www.uniprot.org/uniprot/SHB17_YEAST SHB17_YEAST] Sedoheptulose 1,7-bisphosphatase involved in riboneogenesis. Dephosphorylates sedoheptulose 1,7-bisphosphate (SBP), which is converted via the non-oxidative pentose phosphate pathway to ribose-5-phosphate. Has a fructose 1,6-bisphosphatase activity in vitro, but this is probably not biologically relevant, since deletion does not affect fructose 1,6-biphosphate (FBP) levels.<ref>PMID:21663798</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f3/3f3k_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f3/3f3k_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 34: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Atcc 18824]]
+[[Category: Large Structures]]
-[[Category: Cuff, M]]
-[[Category: Cui, H]]
-[[Category: Edwards, A]]
-[[Category: Joachimiak, A]]
-[[Category: Structural genomic]]
-[[Category: Savchenko, A]]
-[[Category: Xu, X]]
-[[Category: Mcsg]]
-[[Category: PSI, Protein structure initiative]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Unknown function]]
+[[Category: Cuff M]]
+[[Category: Cui H]]
+[[Category: Edwards A]]
+[[Category: Joachimiak A]]
+[[Category: Savchenko A]]
+[[Category: Xu X]]