3dbi: Difference between revisions

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[[Image:3dbi.png|left|200px]]


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==CRYSTAL STRUCTURE OF SUGAR-BINDING TRANSCRIPTIONAL REGULATOR (LACI FAMILY) FROM ESCHERICHIA COLI COMPLEXED WITH PHOSPHATE==
The line below this paragraph, containing "STRUCTURE_3dbi", creates the "Structure Box" on the page.
<StructureSection load='3dbi' size='340' side='right'caption='[[3dbi]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DBI FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_3dbi|  PDB=3dbi  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dbi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dbi OCA], [https://pdbe.org/3dbi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dbi RCSB], [https://www.ebi.ac.uk/pdbsum/3dbi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dbi ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dbi TOPSAN]</span></td></tr>
 
</table>
===CRYSTAL STRUCTURE OF SUGAR-BINDING TRANSCRIPTIONAL REGULATOR (LACI FAMILY) FROM ESCHERICHIA COLI COMPLEXED WITH PHOSPHATE===
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
3DBI is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBI OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/3dbi_consurf.spt"</scriptWhenChecked>
[[Category: Escherichia coli k12]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Almo, S C.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Burley, S K.]]
  </jmolCheckbox>
[[Category: Freeman, J.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dbi ConSurf].
[[Category: Koss, J.]]
<div style="clear:both"></div>
[[Category: Maletic, M.]]
__TOC__
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
</StructureSection>
[[Category: Ozyurt, S.]]
[[Category: Large Structures]]
[[Category: Patskovsky, Y.]]
[[Category: Almo SC]]
[[Category: Sauder, J M.]]
[[Category: Burley SK]]
[[Category: Wasserman, S R.]]
[[Category: Freeman J]]
[[Category: Wu, B.]]
[[Category: Koss J]]
[[Category: Dna-binding]]
[[Category: Maletic M]]
[[Category: New york sgx research center for structural genomic]]
[[Category: Ozyurt S]]
[[Category: Nysgxrc]]
[[Category: Patskovsky Y]]
[[Category: Protein structure initiative]]
[[Category: Sauder JM]]
[[Category: Psi-2]]
[[Category: Wasserman SR]]
[[Category: Repressor]]
[[Category: Wu B]]
[[Category: Structural genomic]]
[[Category: Sugar-binding transcriptional regulator]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 12:10:38 2009''

Latest revision as of 10:55, 9 October 2024

CRYSTAL STRUCTURE OF SUGAR-BINDING TRANSCRIPTIONAL REGULATOR (LACI FAMILY) FROM ESCHERICHIA COLI COMPLEXED WITH PHOSPHATECRYSTAL STRUCTURE OF SUGAR-BINDING TRANSCRIPTIONAL REGULATOR (LACI FAMILY) FROM ESCHERICHIA COLI COMPLEXED WITH PHOSPHATE

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.45Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3dbi, resolution 2.45Å

Drag the structure with the mouse to rotate

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