2vi4: Difference between revisions

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-{{Seed}}
-[[Image:2vi4.png|left|200px]]
-<!--
+==Atomic resolution (1.10 A) structure of purified thaumatin I grown in sodium DL-tartrate at 6 C.==
-The line below this paragraph, containing "STRUCTURE_2vi4", creates the "Structure Box" on the page.
+<StructureSection load='2vi4' size='340' side='right'caption='[[2vi4]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2vi4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VI4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VI4 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.1&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-{{STRUCTURE_2vi4|  PDB=2vi4  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vi4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vi4 OCA], [https://pdbe.org/2vi4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vi4 RCSB], [https://www.ebi.ac.uk/pdbsum/2vi4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vi4 ProSAT]</span></td></tr>
+</table>
-===ATOMIC RESOLUTION (1.10 A) STRUCTURE OF PURIFIED THAUMATIN I GROWN IN SODIUM DL-TARTRATE AT 6 C.===
+== Function ==
+[https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-VI4 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VI4 OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vi4_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vi4 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Thaumatococcus daniellii]]
-[[Category: Asherie, N.]]
+[[Category: Asherie N]]
-[[Category: Ginsberg, C.]]
+[[Category: Ginsberg C]]
-[[Category: Jakoncic, J.]]
+[[Category: Jakoncic J]]
-[[Category: Chirality]]
-[[Category: Kinetics of crystallization]]
-[[Category: Microbatch]]
-[[Category: Plant protein]]
-[[Category: Sweet protein]]
-[[Category: Temperature]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 25 10:40:26 2009''