2r39: Difference between revisions

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==Crystal structure of FixG-related protein from Vibrio parahaemolyticus==
==Crystal structure of FixG-related protein from Vibrio parahaemolyticus==
<StructureSection load='2r39' size='340' side='right' caption='[[2r39]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
<StructureSection load='2r39' size='340' side='right'caption='[[2r39]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2r39]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R39 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2R39 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2r39]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R39 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R39 FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.02&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP3052 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2r39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r39 OCA], [http://pdbe.org/2r39 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2r39 RCSB], [http://www.ebi.ac.uk/pdbsum/2r39 PDBsum], [http://www.topsan.org/Proteins/MCSG/2r39 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r39 OCA], [https://pdbe.org/2r39 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r39 RCSB], [https://www.ebi.ac.uk/pdbsum/2r39 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r39 ProSAT], [https://www.topsan.org/Proteins/MCSG/2r39 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q87KC5_VIBPA Q87KC5_VIBPA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r3/2r39_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r3/2r39_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r39 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Vibpa]]
[[Category: Large Structures]]
[[Category: Abdullah, J]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Bigelow, L]]
[[Category: Abdullah J]]
[[Category: Chang, C]]
[[Category: Bigelow L]]
[[Category: Joachimiak, A]]
[[Category: Chang C]]
[[Category: Structural genomic]]
[[Category: Joachimiak A]]
[[Category: Fixg-related protein]]
[[Category: Iron]]
[[Category: Iron-sulfur]]
[[Category: Mcsg]]
[[Category: Metal-binding]]
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]
[[Category: Vibrio parahaemolyticus]]

Latest revision as of 10:46, 9 October 2024

Crystal structure of FixG-related protein from Vibrio parahaemolyticusCrystal structure of FixG-related protein from Vibrio parahaemolyticus

Structural highlights

2r39 is a 1 chain structure with sequence from Vibrio parahaemolyticus RIMD 2210633. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.02Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q87KC5_VIBPA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2r39, resolution 2.02Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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