2ood: Difference between revisions

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{{Seed}}
[[Image:2ood.png|left|200px]]


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==Crystal structure of guanine deaminase from Bradyrhizobium japonicum==
The line below this paragraph, containing "STRUCTURE_2ood", creates the "Structure Box" on the page.
<StructureSection load='2ood' size='340' side='right'caption='[[2ood]], [[Resolution|resolution]] 2.62&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OOD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.62&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GUN:GUANINE'>GUN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_2ood|  PDB=2ood |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ood FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ood OCA], [https://pdbe.org/2ood PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ood RCSB], [https://www.ebi.ac.uk/pdbsum/2ood PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ood ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ood TOPSAN]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/2ood_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ood ConSurf].
<div style="clear:both"></div>


===Crystal structure of guanine deaminase from Bradyrhizobium japonicum===
==See Also==
 
*[[Deaminase 3D structures|Deaminase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2OOD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOD OCA].
[[Category: Large Structures]]
[[Category: Bradyrhizobium japonicum]]
[[Category: Agarwal R]]
[[Category: Guanine deaminase]]
[[Category: Burley SK]]
[[Category: Single protein]]
[[Category: Swaminathan S]]
[[Category: Agarwal, R.]]
[[Category: Burley, S K.]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Swaminathan, S.]]
[[Category: 9231a]]
[[Category: Crystal structure]]
[[Category: Guanine]]
[[Category: Guanine deaminase]]
[[Category: New york structural genomix research consortium]]
[[Category: Nysgxrc]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Psi-ii]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 19:23:21 2008''

Latest revision as of 10:44, 9 October 2024

Crystal structure of guanine deaminase from Bradyrhizobium japonicumCrystal structure of guanine deaminase from Bradyrhizobium japonicum

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.62Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2ood, resolution 2.62Å

Drag the structure with the mouse to rotate

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