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[[Image:2ogg.gif|left|200px]]<br /><applet load="2ogg" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2ogg, resolution 2.50&Aring;" />
'''Structure of B. subtilis trehalose repressor (TreR) effector binding domain'''<br />


==About this Structure==
==Structure of B. subtilis trehalose repressor (TreR) effector binding domain==
2OGG is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] with <scene name='pdbligand=NA:'>NA</scene>, <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OGG OCA].  
<StructureSection load='2ogg' size='340' side='right'caption='[[2ogg]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 
== Structural highlights ==
==Reference==
<table><tr><td colspan='2'>[[2ogg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OGG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OGG FirstGlance]. <br>
The crystal structure of the effector-binding domain of the trehalose repressor TreR from Bacillus subtilis 168 reveals a unique quarternary assembly., Rezacova P, Krejcirikova V, Borek D, Moy SF, Joachimiak A, Otwinowski Z, Proteins. 2007 Nov 15;69(3):679-82. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17705272 17705272]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ogg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ogg OCA], [https://pdbe.org/2ogg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ogg RCSB], [https://www.ebi.ac.uk/pdbsum/2ogg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ogg ProSAT], [https://www.topsan.org/Proteins/MCSG/2ogg TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/TRER_BACSU TRER_BACSU] Repressor for the trehalose operon (treP and treA). Binds trehalose-6-phosphate, which probably acts as an inducer.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/og/2ogg_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ogg ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Borek, D.]]
[[Category: Borek D]]
[[Category: Joachimiak, A.]]
[[Category: Joachimiak A]]
[[Category: Krejcirikova, V.]]
[[Category: Krejcirikova V]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Moy SF]]
[[Category: Moy, S F.]]
[[Category: Otwinowski Z]]
[[Category: Otwinowski, Z.]]
[[Category: Rezacova P]]
[[Category: Rezacova, P.]]
[[Category: GOL]]
[[Category: NA]]
[[Category: SO4]]
[[Category: gene repressor]]
[[Category: mcsg]]
[[Category: midwest center for structural genomics]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomics]]
[[Category: sugar binding]]
[[Category: transcription]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:18:15 2008''

Latest revision as of 10:44, 9 October 2024

Structure of B. subtilis trehalose repressor (TreR) effector binding domainStructure of B. subtilis trehalose repressor (TreR) effector binding domain

Structural highlights

2ogg is a 1 chain structure with sequence from Bacillus subtilis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.5Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

TRER_BACSU Repressor for the trehalose operon (treP and treA). Binds trehalose-6-phosphate, which probably acts as an inducer.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2ogg, resolution 2.50Å

Drag the structure with the mouse to rotate

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