2kmd: Difference between revisions

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 ==Ras signaling requires dynamic properties of Ets1 for phosphorylation-enhanced binding to co-activator CBP==
-<StructureSection load='2kmd' size='340' side='right' caption='[[2kmd]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2kmd' size='340' side='right'caption='[[2kmd]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2kmd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KMD FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2kmd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KMD FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2jv3|2jv3]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Ets1, Ets-1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmd OCA], [https://pdbe.org/2kmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kmd RCSB], [https://www.ebi.ac.uk/pdbsum/2kmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kmd ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmd OCA], [http://pdbe.org/2kmd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kmd RCSB], [http://www.ebi.ac.uk/pdbsum/2kmd PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/ETS1_MOUSE ETS1_MOUSE]] Transcription factor.
+[https://www.uniprot.org/uniprot/ETS1_MOUSE ETS1_MOUSE] Transcription factor.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/2kmd_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/2kmd_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kmd ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 36: / Line 36: @@
 __TOC__
 </StructureSection>
-[[Category: Lk3 transgenic mice]]
+[[Category: Large Structures]]
-[[Category: Blaszczak, A G]]
+[[Category: Mus musculus]]
-[[Category: Graves, B J]]
+[[Category: Blaszczak AG]]
-[[Category: Kang, H]]
+[[Category: Graves BJ]]
-[[Category: Lau, D K.W]]
+[[Category: Kang H]]
-[[Category: Lee, G M]]
+[[Category: Lau DKW]]
-[[Category: McIntosh, L P]]
+[[Category: Lee GM]]
-[[Category: Nelson, M L]]
+[[Category: McIntosh LP]]
-[[Category: Conformational dynamic]]
+[[Category: Nelson ML]]
-[[Category: Ets-1]]
-[[Category: Mapk phosphorylation]]
-[[Category: Phosphoprotein]]
-[[Category: Pnt domain]]
-[[Category: Protein binding]]
-[[Category: Proto-oncogene]]
-[[Category: Sam domain]]
-[[Category: Transcription]]
-[[Category: Transcription regulation]]