1ysh: Difference between revisions

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New page: left|200px<br /><applet load="1ysh" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ysh, resolution 9.5Å" /> '''Localization and dyna...
 
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'''Localization and dynamic behavior of ribosomal protein L30e'''<br />


==Overview==
==Localization and dynamic behavior of ribosomal protein L30e==
The ribosomal protein L30e is an indispensable component of the eukaryotic, 80S ribosome, where it is part of the large (60S) ribosomal subunit. Here, we determined the localization of L30e in the cryo-EM map of the 80S wheat, germ (wg) ribosome at a resolution of 9.5 A. L30e is part of the interface, between large and small subunits, where it dynamically participates in the, formation of the two intersubunit bridges eB9 and B4.
<SX load='1ysh' size='340' side='right' viewer='molstar' caption='[[1ysh]], [[Resolution|resolution]] 9.50&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1ysh]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa], [https://en.wikipedia.org/wiki/Triticum_aestivum Triticum aestivum] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YSH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YSH FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 9.5&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ysh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ysh OCA], [https://pdbe.org/1ysh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ysh RCSB], [https://www.ebi.ac.uk/pdbsum/1ysh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ysh ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/RL30_WHEAT RL30_WHEAT]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ys/1ysh_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ysh ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The ribosomal protein L30e is an indispensable component of the eukaryotic 80S ribosome, where it is part of the large (60S) ribosomal subunit. Here, we determined the localization of L30e in the cryo-EM map of the 80S wheat germ (wg) ribosome at a resolution of 9.5 A. L30e is part of the interface between large and small subunits, where it dynamically participates in the formation of the two intersubunit bridges eB9 and B4.


==About this Structure==
Localization and dynamic behavior of ribosomal protein L30e.,Halic M, Becker T, Frank J, Spahn CM, Beckmann R Nat Struct Mol Biol. 2005 May;12(5):467-8. Epub 2005 May 1. PMID:15864315<ref>PMID:15864315</ref>
1YSH is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa] and [http://en.wikipedia.org/wiki/Triticum_aestivum Triticum aestivum]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YSH OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Localization and dynamic behavior of ribosomal protein L30e., Halic M, Becker T, Frank J, Spahn CM, Beckmann R, Nat Struct Mol Biol. 2005 May;12(5):467-8. Epub 2005 May 1. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15864315 15864315]
</div>
<div class="pdbe-citations 1ysh" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Ribosomal protein L30|Ribosomal protein L30]]
*[[Ribosomal protein S13|Ribosomal protein S13]]
== References ==
<references/>
__TOC__
</SX>
[[Category: Large Structures]]
[[Category: Oryza sativa]]
[[Category: Oryza sativa]]
[[Category: Protein complex]]
[[Category: Synthetic construct]]
[[Category: Triticum aestivum]]
[[Category: Triticum aestivum]]
[[Category: Becker, T.]]
[[Category: Becker T]]
[[Category: Beckmann, R.]]
[[Category: Beckmann R]]
[[Category: Frank, J.]]
[[Category: Frank J]]
[[Category: Halic, M.]]
[[Category: Halic M]]
[[Category: Spahn, C.M.]]
[[Category: Spahn CM]]
[[Category: rna]]
[[Category: structural protein]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 07:01:27 2007''

Latest revision as of 10:32, 9 October 2024

Localization and dynamic behavior of ribosomal protein L30eLocalization and dynamic behavior of ribosomal protein L30e

1ysh, resolution 9.50Å

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