1wwm: Difference between revisions

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-[[Image:1wwm.gif|left|200px]]
-<!--
+==Crystal Structure of Conserved Hypothetical Protein TT2028 from an Extremely Thermophilic Bacterium Thermus thermophilus HB8==
-The line below this paragraph, containing "STRUCTURE_1wwm", creates the "Structure Box" on the page.
+<StructureSection load='1wwm' size='340' side='right'caption='[[1wwm]], [[Resolution|resolution]] 2.61&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1wwm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WWM FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.61&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_1wwm|  PDB=1wwm  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wwm OCA], [https://pdbe.org/1wwm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wwm RCSB], [https://www.ebi.ac.uk/pdbsum/1wwm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wwm ProSAT], [https://www.topsan.org/Proteins/RSGI/1wwm TOPSAN]</span></td></tr>
+</table>
-'''Crystal Structure of Conserved Hypothetical Protein TT2028 from an Extremely Thermophilic Bacterium Thermus thermophilus HB8'''
+== Function ==
+[https://www.uniprot.org/uniprot/Q5SLX4_THET8 Q5SLX4_THET8]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-WWM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WWM OCA].
+Check<jmol>
-[[Category: Single protein]]
+  <jmolCheckbox>
-[[Category: Thermus thermophilus]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ww/1wwm_consurf.spt"</scriptWhenChecked>
-[[Category: Kuramitsu, S.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Mizohata, E.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Murayama, K.]]
+  </jmolCheckbox>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wwm ConSurf].
-[[Category: Sakai, H.]]
+<div style="clear:both"></div>
-[[Category: Shirouzu, M.]]
+__TOC__
-[[Category: Terada, T.]]
+</StructureSection>
-[[Category: Ushikoshi-Nakayama, R.]]
+[[Category: Large Structures]]
-[[Category: Yokoyama, S.]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: Putative transctiption activator]]
+[[Category: Kuramitsu S]]
-[[Category: Riken structural genomics/proteomics initiative]]
+[[Category: Mizohata E]]
-[[Category: Rsgi]]
+[[Category: Murayama K]]
-[[Category: Structural genomic]]
+[[Category: Sakai H]]
-[[Category: Tena/thi-4 family]]
+[[Category: Shirouzu M]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 14:14:05 2008''
+[[Category: Terada T]]
+[[Category: Ushikoshi-Nakayama R]]
+[[Category: Yokoyama S]]