1vr5: Difference between revisions

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New page: left|200px<br /><applet load="1vr5" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vr5, resolution 1.73Å" /> '''Crystal structure of...
 
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[[Image:1vr5.gif|left|200px]]<br /><applet load="1vr5" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1vr5, resolution 1.73&Aring;" />
'''Crystal structure of Oligopeptide ABC transporter, periplasmic oligopeptide-binding (TM1223) from THERMOTOGA MARITIMA at 1.73 A resolution'''<br />


==About this Structure==
==Crystal structure of Oligopeptide ABC transporter, periplasmic oligopeptide-binding (TM1223) from THERMOTOGA MARITIMA at 1.73 A resolution==
1VR5 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8] with NA, CL, ACT, EPE, EDO and FMT as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VR5 OCA].  
<StructureSection load='1vr5' size='340' side='right'caption='[[1vr5]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Thermotoga maritima msb8]]
<table><tr><td colspan='2'>[[1vr5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VR5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VR5 FirstGlance]. <br>
[[Category: JCSG, Joint.Center.for.Structural.Genomics.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73&#8491;</td></tr>
[[Category: ACT]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
[[Category: CL]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vr5 OCA], [https://pdbe.org/1vr5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vr5 RCSB], [https://www.ebi.ac.uk/pdbsum/1vr5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vr5 ProSAT], [https://www.topsan.org/Proteins/JCSG/1vr5 TOPSAN]</span></td></tr>
[[Category: EDO]]
</table>
[[Category: EPE]]
== Function ==
[[Category: FMT]]
[https://www.uniprot.org/uniprot/Q9X0V0_THEMA Q9X0V0_THEMA]  
[[Category: NA]]
== Evolutionary Conservation ==
[[Category: jcsg]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: joint center for structural genomics]]
Check<jmol>
[[Category: oligopeptide abc transporter]]
  <jmolCheckbox>
[[Category: periplasmic oligopeptide-binding]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/1vr5_consurf.spt"</scriptWhenChecked>
[[Category: protein structure initiative]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: psi]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: structural genomics]]
  </jmolCheckbox>
[[Category: tm1223]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vr5 ConSurf].
<div style="clear:both"></div>


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 23:04:12 2007''
==See Also==
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermotoga maritima MSB8]]

Latest revision as of 10:29, 9 October 2024

Crystal structure of Oligopeptide ABC transporter, periplasmic oligopeptide-binding (TM1223) from THERMOTOGA MARITIMA at 1.73 A resolutionCrystal structure of Oligopeptide ABC transporter, periplasmic oligopeptide-binding (TM1223) from THERMOTOGA MARITIMA at 1.73 A resolution

Structural highlights

1vr5 is a 2 chain structure with sequence from Thermotoga maritima MSB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.73Å
Ligands:, , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q9X0V0_THEMA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1vr5, resolution 1.73Å

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