1jaf: Difference between revisions

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-[[Image:1jaf.gif|left|200px]]
- {{Structure
+==CRYSTAL STRUCTURE OF CYTOCHROME C' FROM RHODOCYCLUS GELATINOSUS AT 2.5 ANGSTOMS RESOLUTION==
-|PDB= 1jaf |SIZE=350|CAPTION= <scene name='initialview01'>1jaf</scene>, resolution 2.5&Aring;
+<StructureSection load='1jaf' size='340' side='right'caption='[[1jaf]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>
+<table><tr><td colspan='2'>[[1jaf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rubrivivax_gelatinosus Rubrivivax gelatinosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JAF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JAF FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-|DOMAIN=
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jaf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jaf OCA], [https://pdbe.org/1jaf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jaf RCSB], [https://www.ebi.ac.uk/pdbsum/1jaf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jaf ProSAT]</span></td></tr>
-|RELATEDENTRY=
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jaf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jaf OCA], [http://www.ebi.ac.uk/pdbsum/1jaf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1jaf RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/CYCP_RUBGE CYCP_RUBGE] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ja/1jaf_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jaf ConSurf].
+<div style="clear:both"></div>
-'''CRYSTAL STRUCTURE OF CYTOCHROME C' FROM RHODOCYCLUS GELATINOSUS AT 2.5 ANGSTOMS RESOLUTION'''
+==See Also==
+*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-JAF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rubrivivax_gelatinosus Rubrivivax gelatinosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JAF OCA].
+[[Category: Large Structures]]
 [[Category: Rubrivivax gelatinosus]]
-[[Category: Single protein]]
+[[Category: Archer M]]
-[[Category: Archer, M.]]
+[[Category: Banci L]]
-[[Category: Banci, L.]]
+[[Category: Dikaya E]]
-[[Category: Dikaya, E.]]
+[[Category: Romao MJ]]
-[[Category: Romao, M J.]]
-[[Category: cytochrome cs']]
-[[Category: electron transport]]
-[[Category: heme protein]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:30:46 2008''