1eai: Difference between revisions

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-{{Seed}}
-[[Image:1eai.png|left|200px]]
-<!--
+==COMPLEX OF ASCARIS CHYMOTRPSIN/ELASTASE INHIBITOR WITH PORCINE ELASTASE==
-The line below this paragraph, containing "STRUCTURE_1eai", creates the "Structure Box" on the page.
+<StructureSection load='1eai' size='340' side='right'caption='[[1eai]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1eai]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ascaris_suum Ascaris suum] and [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EAI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EAI FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eai FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eai OCA], [https://pdbe.org/1eai PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eai RCSB], [https://www.ebi.ac.uk/pdbsum/1eai PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eai ProSAT]</span></td></tr>
-{{STRUCTURE_1eai|  PDB=1eai  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CELA1_PIG CELA1_PIG] Acts upon elastin.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ea/1eai_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eai ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+BACKGROUND: The intestinal parasitic worm, Ascaris suum, produces a variety of protein inhibitors that defend the organism against the host's proteinases. Eight different proteins from Ascaris suum have been identified as inhibitors of serine proteinases, targeting chymotrypsin, elastase and trypsin. These inhibitors share 30-40% sequence identity with one another, but have virtually no sequence identity with members of any of the other families of serine proteinase inhibitors. RESULTS: The crystal structure of the complex of porcine pancreatic elastase with a chymotrypsin/elastase inhibitor from Ascaris suum (the C/E-1 inhibitor) has been solved to 2.4 A resolution by the molecular replacement method. The C/E-1 inhibitor exhibits a novel folding motif. There are only two small beta-sheets and two single-turn 3(10)-helices in this inhibitor. Unlike the majority of proteins, the C/E-1 inhibitor does not have a hydrophobic core. The presence and unique topography of the five disulfide bridges suggests that they play important roles in maintaining the tertiary structure of the inhibitor. In addition, the side chains of several charged residues from electrostatic and hydrogen-bonding cascades, which also probably compensate for the lack of extensive secondary structures and a hydrophobic core. The reactive-site loop of this inhibitor displays a conformation that is characteristic of most serine proteinase inhibitors. CONCLUSIONS: The structure of the C/E-1 inhibitor confirms that inhibitors from Ascaris suum belong to a novel family of proteinase inhibitors. It also provides conclusive evidence for the correct disulfide bridge connections. The C/E-1 inhibitor probably acts by a common inhibitory mechanism proposed for other substrate-like protein inhibitors of serine proteinases. The unusual molecular scaffolding presents a challenge to current folding algorithms. Proteins like the C/E-1 inhibitor may provide a valuable model system to study how the primary sequence of a protein dictates its three-dimensional structure.
-===COMPLEX OF ASCARIS CHYMOTRPSIN/ELASTASE INHIBITOR WITH PORCINE ELASTASE===
+The molecular structure of the complex of Ascaris chymotrypsin/elastase inhibitor with porcine elastase.,Huang K, Strynadka NC, Bernard VD, Peanasky RJ, James MN Structure. 1994 Jul 15;2(7):679-89. PMID:7922044<ref>PMID:7922044</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 1eai" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_7922044}}, adds the Publication Abstract to the page
+*[[Chymotrypsin inhibitor 3D structures|Chymotrypsin inhibitor 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 7922044 is the PubMed ID number.
+*[[Elastase|Elastase]]
--->
+*[[Elastase 3D structures|Elastase 3D structures]]
-{{ABSTRACT_PUBMED_7922044}}
+== References ==
+<references/>
-==About this Structure==
+__TOC__
-EAI is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Ascaris_suum Ascaris suum] and [http://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EAI OCA].
+</StructureSection>
-==Reference==
-The molecular structure of the complex of Ascaris chymotrypsin/elastase inhibitor with porcine elastase., Huang K, Strynadka NC, Bernard VD, Peanasky RJ, James MN, Structure. 1994 Jul 15;2(7):679-89. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7922044 7922044]
 [[Category: Ascaris suum]]
-[[Category: Pancreatic elastase]]
+[[Category: Large Structures]]
-[[Category: Protein complex]]
 [[Category: Sus scrofa]]
-[[Category: Bernard, V D.]]
+[[Category: Bernard VD]]
-[[Category: Huang, K.]]
+[[Category: Huang K]]
-[[Category: James, M N.G.]]
+[[Category: James MNG]]
-[[Category: Peanasky, R J.]]
+[[Category: Peanasky RJ]]
-[[Category: Strynadka, N C.J.]]
+[[Category: Strynadka NCJ]]
-[[Category: Ascaris summ]]
-[[Category: Elastase]]
-[[Category: Protein inhibitor]]
-[[Category: Serine proteinase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 00:24:40 2008''