Amylase 3D structures: Difference between revisions
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* α-amylase | * α-amylase | ||
** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis'' | ** [[1pif]] – pAAM – pig<br /> | ||
** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron'' | **[[8or6]] – AAM – ''Drosophila melanogaster''<br /> | ||
** [[3kwx]], [[2guy]] – AoAAM – ''Aspergilluys oryzae'' | ** [[1ht6]], [[1amy]] - bAAM – barley<br /> | ||
** [[2wpg]] – AAM – ''Xanthomonas campestris'' | ** [[3bsg]] – bAAM (mutant) <br /> | ||
** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium'' | ** [[3wn6]] – AAM (mutant) – Japonica rice<br /> | ||
** [[3bh4]] – BaAAM – ''Bacillus amyloliquefaciens'' | ** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis''<br /> | ||
** [[1e3x]], [[1e43]] – BaAAM chimera | ** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''<br /> | ||
** [[3kwx]], [[2guy]], [[6xsj]], [[6xsv]], [[7p4w]] – AoAAM – ''Aspergilluys oryzae''<br /> | |||
** [[2wpg]] – AAM – ''Xanthomonas campestris''<br /> | |||
** [[3dhu]] – AAM – ''Lactobacillus plantarum'' | ** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''<br /> | ||
** [[3dc0]], [[1ud2]], [[1ud4]], [[1ud5]], [[1ud6]], [[1ud8]], [[1ud3]] – BacAAM – ''Bacillus KR8104'' | ** [[3bh4]] – BaAAM – ''Bacillus amyloliquefaciens''<br /> | ||
** [[3bcf]], [[1wza]] – HoAAM – ''Halothermothrix orenii'' | ** [[1e3x]], [[1e43]] – BaAAM chimera<br /> | ||
** [[2die]], [[1wp6]] – AAM alkaline – ''Bacillus sp.'' | ** [[3dhu]] – AAM – ''Lactobacillus plantarum''<br /> | ||
** [[2gjr]] – BhAAM – ''Bacillus halmapalus'' | ** [[3dc0]], [[1ud2]], [[1ud4]], [[1ud5]], [[1ud6]], [[1ud8]], [[1ud3]] – BacAAM – ''Bacillus KR8104''<br /> | ||
** [[2b5d]] – AAM – ''Thermotoga maritima'' | ** [[3bcf]], [[1wza]] – HoAAM – ''Halothermothrix orenii''<br /> | ||
** [[2c3g]], [[2c3v]] – BhaloAAM – ''Bacillus halodurans'' | ** [[2die]], [[1wp6]] – AAM alkaline – ''Bacillus sp.''<br /> | ||
** [[1ji1]], [[1ji2]], [[1bvz]] - TvAAM – ''Thermoactinomyces vulgaris'' | **[[8jn0]] - AAM alkaline 34-122 – ''Alkalihalophilum pseudofirmus'' | ||
** [[2gjr]] – BhAAM – ''Bacillus halmapalus''<br /> | |||
** [[2b5d]] – AAM – ''Thermotoga maritima''<br /> | |||
** [[2c3g]], [[2c3v]] – BhaloAAM – ''Bacillus halodurans''<br /> | |||
** [[1ji1]], [[1ji2]], [[1bvz]] - TvAAM – ''Thermoactinomyces vulgaris''<br /> | |||
** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant) | ** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant) | ||
** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei'' | ** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''<br /> | ||
** [[1ob0]], [[1bli]] - BlAAM (mutant) | **[[6toy]] - BlAAM – ''Bacillus licheniformis''<br /> | ||
** [[1ob0]], [[1bli]], [[6tp2]] - BlAAM (mutant) <br /> | |||
** [[1vjs]] – BlAAM precursor<br /> | ** [[1vjs]] – BlAAM precursor<br /> | ||
** [[1bpl]] – BlAAM<br /> | ** [[1bpl]] – BlAAM<br /> | ||
** [[1b0i]], [[1aqm]], [[1aqh]] – PhAAM - ''Pseudoalteromonas haloplanktis'' | ** [[1b0i]], [[1aqm]], [[1aqh]] – PhAAM - ''Pseudoalteromonas haloplanktis''<br /> | ||
** [[1jd7]], [[1jd9]] - PhAAM (mutant) | ** [[1jd7]], [[1jd9]], [[8cqg]] - PhAAM (mutant)<br /> | ||
** [[1g5a]] – NpAAM – ''Neisseria polysaccharea'' | ** [[1g5a]] – NpAAM – ''Neisseria polysaccharea''<br /> | ||
** [[1hvx]] - BaAAM – ''Bacillus stearothermophilus'' | ** [[1hvx]] - BaAAM – ''Bacillus stearothermophilus''<br /> | ||
**[[4uzu]] – BaAAM (mutant) <br /> | **[[4uzu]] – BaAAM (mutant) <br /> | ||
** [[1qho]] – GsAAM – ''Geobacillus stearothermophilus'' | ** [[1qho]] – GsAAM – ''Geobacillus stearothermophilus''<br /> | ||
** [[1jae]] – TmAAM – ''Tenebrio molitor'' | ** [[1jae]] – TmAAM – ''Tenebrio molitor''<br /> | ||
** [[6taa]], [[2aaa]] - AoAAM<br /> | ** [[6taa]], [[2aaa]] - AoAAM<br /> | ||
** [[4aee]] – AAM catalytic domain – ''Staphylothermus marinus''<br /> | ** [[4aee]] – AAM catalytic domain – ''Staphylothermus marinus''<br /> | ||
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**[[5m99]] – AAM – ''Thermotoga petrophila''<br /> | **[[5m99]] – AAM – ''Thermotoga petrophila''<br /> | ||
** [[4ays]] – AAM – ''Deinococcus radiodurans''<br /> | ** [[4ays]] – AAM – ''Deinococcus radiodurans''<br /> | ||
**[[5a2a]] - AnAAM - ''Anoxybacillus''<br /> | **[[5a2a]] - AnAAM - ''Anoxybacillus''<br /> | ||
**[[6az5]] – AAM – ''Eubacterium rectale''<br /> | **[[6az5]] – AAM – ''Eubacterium rectale''<br /> | ||
**[[6sao]] – AAM – ''Thamnidium elegans''<br /> | |||
**[[6sau]] – AAM – ''Cordyceps farinosa''<br /> | |||
**[[6sav]] – AAM – ''Rhizomucor pusillus''<br /> | |||
**[[6m4k]] – EfAAM – ''Eisenia fetida''<br /> | |||
**[[6m4l]], [[6m4m]] – EfAAM (mutant) <br /> | |||
**[[7jjt]] - AAM – ''Ruminococcus bromii''<br /> | |||
**[[8xx9]] – RmAAM 232—886 – ''Rhodothermus marinus''<br /> | |||
**[[8im8]] – AAM – ''Escherichia coli''<br /> | |||
**[[8dge]] – BoAAM – ''Bacterioides ovatus''<br /> | |||
** ''AAM saccharide complexes'' | ** ''AAM saccharide complexes'' | ||
*** [[3l2l]], [[3l2m]], [[1vah]], [[1wo2]], [[1ua3]], [[1pig]], [[1ppi]] - pAAM + saccharide<br /> | *** [[3l2l]], [[3l2m]], [[1vah]], [[1wo2]], [[1ua3]], [[1pig]], [[1ppi]] - pAAM + saccharide<br /> | ||
*** [[1hx0]] – pAAM + acarbose<br /> | *** [[1hx0]] – pAAM + acarbose<br /> | ||
*** [[1ose]] – pAAM + acarbose<br /> | *** [[1ose]] – pAAM + acarbose<br /> | ||
*** [[1bg9]], [[1rpk]] - bAAM + acarbose<br /> | |||
*** [[1p6w]] – bAAM + substrate analog | |||
*** [[1rp8]], [[1b1y]], [[1rp9]] - bAAM (mutant) + saccharide<br /> | |||
*** [[3bsh]], [[2qpu]], [[2qps]] - bAAM (mutant) + acarbose<br /> | |||
**[[6f9h]], [[6f9j]] - bAAM (mutant) + prodrug<br /> | |||
**[[6f9l]] - bAAM (mutant) + maltose derivative<br /> | |||
*** [[3k8l]] - BtAAM (mutant) + saccharide<br /> | *** [[3k8l]] - BtAAM (mutant) + saccharide<br /> | ||
*** [[3k8m]] - BtAAM + acarbose<br /> | *** [[3k8m]] - BtAAM + acarbose<br /> | ||
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*** [[3a6o]] – TvAAM + acarbose<br /> | *** [[3a6o]] – TvAAM + acarbose<br /> | ||
*** [[2d0f]], [[2d0g]], [[2d0h]], [[1vb9]], [[1vfm]], [[1vfo]], [[1vfu]], [[1uh2]], [[1uh4]] - TvAAM (mutant) + saccharide<br /> | *** [[2d0f]], [[2d0g]], [[2d0h]], [[1vb9]], [[1vfm]], [[1vfo]], [[1vfu]], [[1uh2]], [[1uh4]] - TvAAM (mutant) + saccharide<br /> | ||
*** [[3bcd]] - HoAAM + saccharide<br /> | *** [[3bcd]] - HoAAM + saccharide<br /> | ||
*** [[3bc9]] - HoAAM + acarbose<br /> | *** [[3bc9]] - HoAAM + acarbose<br /> | ||
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*** [[3qgv]] - PwAAM + sucrose<br /> | *** [[3qgv]] - PwAAM + sucrose<br /> | ||
*** [[1g9h]], [[1g94]] - PhAAM + saccharide<br /> | *** [[1g9h]], [[1g94]] - PhAAM + saccharide<br /> | ||
*** [[1kxh]] - PhAAM (mutant) + acarbose<br /> | *** [[1kxh]], [[8ckf]] - PhAAM (mutant) + acarbose<br /> | ||
*** [[1e40]] – BaAAM chimera + saccharide<br /> | *** [[1e40]] – BaAAM chimera + saccharide<br /> | ||
*** [[1e3z]] - BaAAM chimera + acarbose<br /> | *** [[1e3z]] - BaAAM chimera + acarbose<br /> | ||
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*** [[3gly]], [[1agm]], [[1glm]] – AaAAM + saccharide<br /> | *** [[3gly]], [[1agm]], [[1glm]] – AaAAM + saccharide<br /> | ||
*** [[5a2c]], [[5a2b]] - AnAAM + maltose <br /> | *** [[5a2c]], [[5a2b]] - AnAAM + maltose <br /> | ||
**[[6gya]] - AAM + a-glucose + b-glucose - ''Alicyclosbacillus''<br /> | *** [[6gya]] - AAM + a-glucose + b-glucose - ''Alicyclosbacillus''<br /> | ||
*** [[3n92]], [[3n98]] – TkAAM + saccharide<br /> | |||
*** [[6toz]], [[6tp0]], [[6tp1]] - BlAAM + saccharide<br /> | |||
**[[8xxa]] - RmAAM + saccharide <br /> | |||
**[[8dl1]], [[8dl2]] - BoAAM + saccharide <br /> | |||
** ''AAM other complexes'' | ** ''AAM other complexes'' | ||
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*Human pancreatic α-amylase | *Human pancreatic α-amylase | ||
**[[3ij7]], [[1bsi]], [[1hny]], [[4x9y]], [[5u3a]] – hAAM – human<br /> | **[[3ij7]], [[1bsi]], [[1hny]], [[4x9y]], [[5u3a]], [[6z8l]] – hAAM – human<br /> | ||
**[[1xgz]], [[1kb3]], [[1kbb]], [[1kbk]], [[1kgu]], [[1kgw]], [[1kgx]], 2cpu]] - hAAM (mutant) <br /> | **[[1xgz]], [[1kb3]], [[1kbb]], [[1kbk]], [[1kgu]], [[1kgw]], [[1kgx]], 2cpu]] - hAAM (mutant) <br /> | ||
**[[3ij8]], [[3ij9]] – hAAM catalytic intermediate<br /> | **[[3ij8]], [[3ij9]] – hAAM catalytic intermediate<br /> | ||
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**[[1xh1]] - hAAM (mutant) + Cl<br /> | **[[1xh1]] - hAAM (mutant) + Cl<br /> | ||
**[[3old]], [[3ole]], [[3olg]], [[3oli]] – hAAM + statin<br /> | **[[3old]], [[3ole]], [[3olg]], [[3oli]] – hAAM + statin<br /> | ||
**[[1u2y]], [[1u30]], [[1u33]], [[5emy]], [[5e0f]], [[4w93]] – hAAM + inhibitor <br /> | **[[1u2y]], [[1u30]], [[1u33]], [[5emy]], [[5e0f]], [[4w93]], [[6obx]], [[6ocn]] – hAAM + inhibitor <br /> | ||
**[[5kez]], [[5va9]] – hAAM + peptide inhibitor <br /> | **[[5kez]], [[5va9]] – hAAM + peptide inhibitor <br /> | ||
**[[4gqq]] – hAAM + ethyl caffeate<br /> | **[[4gqq]] – hAAM + ethyl caffeate<br /> | ||
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**[[3dhp]] - hAAM (mutant) + acarbose<br /> | **[[3dhp]] - hAAM (mutant) + acarbose<br /> | ||
* Pullulanase α-amylase | |||
** [[2wan]] – AAM – ''Bacillus acidopullululyticus'' | ** [[2wan]] – AAM – ''Bacillus acidopullululyticus'' | ||
** [[2fgz]] – KaAAM – ''Klebsiella aerogenes'' | ** [[2fgz]] – KaAAM – ''Klebsiella aerogenes'' | ||
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** ''Pullulanase α-amylase binary complexes'' | ** ''Pullulanase α-amylase binary complexes'' | ||
*** [[2fh6]], [[2fh8]], [[2fhb]], [[2fhc]], [[2fhf]] - KaAAM + saccharide<br /> | *** [[2fh6]], [[2fh8]], [[2fhb]], [[2fhc]], [[2fhf]] - KaAAM + saccharide<br /> | ||
*** [[3fax]] - AAM + saccharide – ''Streptococcus agalactiae'' | *** [[3fax]] - AAM + saccharide – ''Streptococcus agalactiae'' | ||
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* Neopullulanase α-amylase | * Neopullulanase α-amylase | ||
** [[4aef]] – AAM – ''Pyrococcus furiosus''<br /> | ** [[4aef]] – AAM – ''Pyrococcus furiosus''<br /> | ||
** [[1j0h]] – BsAAM<br /> | ** [[1j0h]] – BsAAM<br /> | ||
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* β-amylase | * β-amylase | ||
** [[2xfr]] – bBAM | |||
** [[1wdp]] – sBAM – soybean | ** [[2xfr]] – bBAM<br /> | ||
** [[2dqx]], [[1uko]], [[1ukp]] – sBAM (mutant) | ** [[1wdp]] – sBAM – soybean<br /> | ||
** [[2dqx]], [[1uko]], [[1ukp]] – sBAM (mutant)<br /> | |||
** [[1fa2]] - BAM + saccharide – Sweet potato<br /> | |||
**[[6ger]] - BAM – wheat<br /> | |||
** [[1vem]], [[5bca]], [[1cqy]], [[1b90]] – BcBAM – ''Bacillus cereus'' | ** [[1vem]], [[5bca]], [[1cqy]], [[1b90]] – BcBAM – ''Bacillus cereus'' | ||
** [[1ven]] - BcBAM (mutant)<br /> | ** [[1ven]] - BcBAM (mutant)<br /> | ||
** ''β-amylase binary complexes'' | ** ''β-amylase binary complexes'' | ||
*** [[2xff]] – bBAM + acarbose<br /> | *** [[2xff]] – bBAM + acarbose<br /> | ||
*** [[2xfy]], [[2xg9]], [[2xgb]], [[2xgi]] – bBAM + inhibitor<br /> | *** [[2xfy]], [[2xg9]], [[2xgb]], [[2xgi]] – bBAM + inhibitor<br /> | ||
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*** [[1wdq]], [[1wdr]], [[1wds]], [[1v3h]], [[1v3i]], [[1q6d]], [[1q6e]], [[1q6f]], [[1q6g]] - sBAM (mutant) + saccharide<br /> | *** [[1wdq]], [[1wdr]], [[1wds]], [[1v3h]], [[1v3i]], [[1q6d]], [[1q6e]], [[1q6f]], [[1q6g]] - sBAM (mutant) + saccharide<br /> | ||
*** [[1q6c]], [[1bfn]], [[1bya]], [[1byb]], [[1byc]], [[1byd]], [[1btc]] - sBAM + saccharide<br /> | *** [[1q6c]], [[1bfn]], [[1bya]], [[1byb]], [[1byc]], [[1byd]], [[1btc]] - sBAM + saccharide<br /> | ||
*** [[1j0y]], [[1j0z]], [[1j10]], [[1j11]], [[1j12]], [[1j18]], [[1b9z]] - BcBAM + saccharide<br /> | *** [[1j0y]], [[1j0z]], [[1j10]], [[1j11]], [[1j12]], [[1j18]], [[1b9z]], [[8zrz]] - BcBAM + saccharide<br /> | ||
*** [[1veo]], [[1vep]], [[1itc]] - BcBAM (mutant) + saccharide<br /> | *** [[1veo]], [[1vep]], [[1itc]] - BcBAM (mutant) + saccharide<br /> | ||
**[[1fa2]], [[5wqu]] - SpBAM + saccharide <br /> | *** [[1fa2]], [[5wqu]] - SpBAM + saccharide <br /> | ||
* γ-amylase | * γ-amylase | ||
** [[1lf6]] – TtGAM – ''Thermoanaerobacterium thermosaccharolyticum'' | ** [[1lf6]] – TtGAM – ''Thermoanaerobacterium thermosaccharolyticum'' | ||
** [[1lf9]] - TtGAM + acarbose<br /> | ** [[1lf9]] - TtGAM + acarbose<br /> | ||
* β/α-amylase | * β/α-amylase | ||
** [[2laa]], [[2lab]] – PpBAAM – ''Paenibacillus polymyxa'' - NMR<br /> | ** [[2laa]], [[2lab]] – PpBAAM – ''Paenibacillus polymyxa'' - NMR<br /> | ||
** [[3voc]] – PpBAAM<br /> | ** [[3voc]] – PpBAAM<br /> | ||
* Maltohexaose-producing amylase | * Maltohexaose-producing amylase | ||
** [[1wp6]] - BacMAM | ** [[1wp6]] - BacMAM | ||
**[[1wpc]] – BacMAM + saccharide<br /> | **[[1wpc]] – BacMAM + saccharide<br /> | ||
* Maltogenic amylase | * Maltogenic amylase | ||
** [[1gvi]], [[1sma]] – MAM – ''Thermus sp.'' | ** [[1gvi]], [[1sma]] – MAM – ''Thermus sp.'' | ||
* Taka amylase | * Taka amylase | ||
** [[2taa]], [[3vx0]], [[3vx1]] – AoTAM | |||
** [[7taa]] – AoTAM + acarbose | ** [[2taa]], [[3vx0]], [[3vx1]]< [[6yq7]] – AoTAM <br /> | ||
** [[7taa]] – AoTAM + acarbose<br /> | |||
** [[6yq9]], [[6yqa]], [[6yqb]], [[6yqc]] – AoTAM + inhibitor<br /> | |||
}} | }} | ||
[[Category: Topic Page]] | [[Category: Topic Page]] | ||