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Cadherin: Difference between revisions

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<StructureSection load='2a4c' size='350' side='right' scene='41/417481/Cv/4' caption='Mouse cadherin-11 EC1 dimer (PDB code [[2a4c]])'>
<StructureSection load='2a4c' size='350' side='right' scene='41/417481/Cv/4' caption='Mouse cadherin-11 EC1 dimer (PDB code [[2a4c]])'>
__TOC__
== Function ==


== Function ==
[[Cadherin|Cadherins]] (CDH) are calcium-dependent adhesion proteins.  They contain extracellular CDH repeats (EC1-EC5) which bind calcium ions.  They are encoded by numerous genes numbered CDH1-CDH23.  Some names of CDH indicate their locations: '''E-CDH''' (epithelial tissue), '''VE-CDH''' (vascular epithelial), '''T-CDH''' bound to membrane, '''N-CDH''' (neurons), '''P-CDH''' (placental), '''K-CDH''' (kidney).  The CDH superfamily contains:<br />
*'''Protocadhedrins''' (Prot-CDH) which are similar to CDH but are unique in their cytoplasmic domains.  They are found mainly in the brain at cell-cell contacts.<ref>PMID:11171368</ref> <br />
*'''Desmogleins''' (Des-CDH) and '''desmocollin''' are CDH found in desmosomes. 


[[Cadherin|Cadherins]] (CDH) are calcium-dependent adhesion proteins.  They contain extracellular CDH repeats (EC1-EC5) which bind calcium ions.  They are encoded by numerous genes numbered CDH1-CDH23.  Some names of CDH indicate their locations: '''E-CDH''' (epithelial tissue), '''VE-CDH''' (vascular epithelial), '''T-CDH''' bound to membrane, '''N-CDH''' (neurons), '''P-CDH''' (placental), '''K-CDH''' (kidney).  The CDH superfamily contains:<br /> *'''Protocadhedrins''' (Prot-CDH) which are similar to CDH but are unique in their cytoplasmic domains.  They are found mainly in the brain at cell-cell contacts.<ref>PMID:11171368</ref> <br />
*'''Desmogleins''' (Des-CDH) are CDH found in desmosomes. 


== Structural highlights ==
== Structural highlights ==
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</StructureSection>
</StructureSection>


== 3D Structures of Cadherin ==
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
* CDH5
**[[2koh]] – mCDH5+PAR3-PDZ3 - mouse<br />
* CDH6
**[[3lnd]] – mCDH6 EC12 (mutant)<br />
*CDH encoded by CDH7
**[[6cgs]] – mCDH7 EC1-EC2<br />
* CDH8
**[[1zxk]] – mCDH8 EC1<br />
**[[2a62]] - mCDH8 EC1-EC3<br />
* CDH11
**[[2a4c]], [[2a4e]] – mCDH11 EC1<br />
**[[6cgb]] - mCDH11 EC1/CDH6 EC2<br />
* CDH20
**[[1zvn]] – cCDH20 EC1 – chicken<br />
*CDH encoded by CDH22
**[[6cg7]] – mCDH20 EC1-EC2<br />
* CDH23
**[[3mvs]], [[2whv]] – mCDH23 N-terminal<br />
**[[2kbr]] – hCDH23 peptide+harmonin – NMR - human<br />
**[[2kbs]] - hCDH23 C-terminal peptide+harmonin PDZ2 – NMR<br />
**[[2wbx]] – mCDH23 EC1<br />
**[[2wcp]] - mCDH23 EC2<br />
**[[2wd0]] - mCDH23 EC1-EC2 (mutant)<br />
**[[5w4t]] - CDH23 EC1-EC3 - zebrafish<br />
**[[5tfm]] - mCDH23 EC6-EC8<br />
**[[5tfl]] - mCDH23 EC7-EC8<br />
**[[5vh2]] - mCDH23 EC12-EC13 (mutant)<br />
**[[5wj8]] - hCDH23 EC13-EC14<br />
**[[5wjm]] - mCDH23 EC17-EC18<br />
**[[5tfk]] - mCDH23 EC19-EC21<br />
**[[5i8d]], [[5ulu]], [[5un2]] - mCDH23 EC19-EC21 (mutant)<br />
**[[5vvm]] - hCDH23 EC21-EC23<br />
**[[5uz8]] - mCDH23 EC22-EC24<br />
**[[5vt8]] - mCDH23 EC23-EC25<br />
**[[4apx]], [[4aq8]], [[4axw]], [[4xxw]] - mCDH23 EC1-EC2 + Prot-CDH15<br />
**[[4aqa]], [[4aqe]] - mCDH23 EC1-EC2 (mutant) + Prot-CDH15
* C-CDH “classical”
**[[1l3w]] – XlC-CDH ectodomain - ''Xenopus laevis''<br />
**[[1q5b]], [[1q5c]], [[1q55]], [[1q5a]] – C-CDH model into desmosome – electron tomography<br />
* E-CDH epithelial or CDH1
**[[1q1p]], [[1ff5]], [[1edh]], [[3lne]], [[3lnf]], [[3lng]], [[3lnh]], [[3lni]], [[2qvf]] – mE-CDH EC1-EC2<br />
**[[3q2v]] – mE-CDH ectodomain<br />
**[[4zt1]], [[2o72]] – hE-CDH EC1-EC2<br />
**[[4zte]] – hE-CDH EC1-EC2 + inhibitor<br />
**[[6fek]] – hE-CDH EC1-EC2 + antibody<br />
**[[1edh]] - mE-CDH EC1-EC2+Ca<br />
**[[3q2l]], [[3q2n]], [[3qrb]] - mE-CDH EC1-EC2 (mutant)<br />
**[[1suh]] – mE-CDH N-terminal - NMR<br />
**[[1i7x]], [[1i7w]] – mE-CDH cytoplasmic domain +catenin<br />
**[[4qd2]] – mE-CDH + botulinum neurotoxin<br />
**[[3ifq]] – hE-CDH EC1-EC3 <br />
**[[3ff7]], [[3ff8]] - hE-CDH EC1-EC3+NK cell receptor<br />
**[[2omt]], [[2omu]], [[2omx]], [[2omz]], [[2omv]], [[2omw]], [[2omy]] – hE-CDH EC1+internalin (mutant)<br />
**[[1o6s]] – E-CDH N-terminal+internalin – ''Listeria monocytogenes''<br />
**[[4qd2]] – mE-CDH + botulinum neurotoxin<br />
*K-CDH kidney or CDH6
**[[5veb]] – hK-CDH EC5 + antibody<br />
**[[6cgu]] – mK-CDH EC1-EC2 <br />
* T-CDH membrane bound
**[[3k5r]], [[6cg6]] – mT-CDH EC1-EC2<br />
**[[3k5s]] - cT-CDH EC1-EC2 <br />
**[[3k6d]] - XlT-CDH EC1 <br />
**[[3k6f]] - mT-CDH EC1<br />
**[[3k6i]] - cT-CDH EC1<br />
**[[2v37]] – hT-CDH N-terminal - NMR<br />
* N-CDH neuronal
**[[1nch]], [[1nci]] – mN-CDH<br />
**[[1ncg]] – mN-CDH (mutant)<br />
**[[2qvi]], [[4nuq]] – mN-CDH EC1-EC2<br />
**[[4num]], [[4nup]] – mN-CDH EC1-EC2 (mutant)<br />
**[[1ncj]] – mN-CDH two domains<br />
**[[3q2w]] – mN-CDH ectodomain<br />
**[[1op4]] - mN-CDH prodomain - NMR<br />
**[[3ubf]] – DmN-CDH ectodomain – ''Drosophila melanogaster''<br />
**[[3ubh]] - DmN-CDH EC1-EC4<br />
**[[3ubg]] - DmN-CDH EC1-EC3
*P-CDH placental or CDH3
**[[4nqq]] – mP-CDH EC1-EC2<br />
**[[4oy9]], [[4zml]], [[4zmn]], [[4zmq]], [[4zmt]], [[4zmw]], [[4zmz]] – hP-CDH EC1-EC2<br />
**[[4zmo]], [[4zmp]], [[4zmv]], [[4zmx]], [[4zmy]] – hP-CDH EC1-EC2 (mutant)<br />
**[[5jyl]], [[5jym]] – hP-CDH EC1-EC2 + SCFV TSP7<br />
*VE-CDH vascular epithelial
**[[3ppe]] – cVE-CDH EC1+EC2<br />
* Protocadherin
**[[6bx7]] - hProt-CDH1 EC1-EC4<br />
**[[2yst]] – hProt-CDH7 EC3 – NMR<br />
**[[2ee0]] - hProt-CDH9 Ca domain – NMR<br />
**[[1wyj]] - mProt-CDH β 14 - NMR<br />
**[[1wuz]] - mProt-CDH4 EC1 – NMR<br />
**[[5cyx]] - mProt-CDH2 EC1+EC2+EC3<br />
**[[5szl]] - mProt-CDH γ A1 EC1-EC4<br />
* Desmoglein
**[[2yqg]] – hDes-CDH2 EC1<br />
**[[5erd]] – hDes-CDH2 ectodomain<br />
**[[5eqx]] – hDes-CDH3 ectodomain<br />
**[[6qnt]], [[6qnu]] – hDesmc2 ectodomain + adenovirus fiber protein – Cryo EM<br />
*Desmocollin
**[[5iry]] – hDesmc1 ectodomain<br />
**[[5erp]], [[5j5j]] – hDesmc2 ectodomain<br />
}}
== References ==
== References ==
<references/>
<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, Michal Harel
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