4dsi: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, Se-dGTP and Calcium==
-<StructureSection load='4dsi' size='340' side='right' caption='[[4dsi]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+<StructureSection load='4dsi' size='340' side='right'caption='[[4dsi]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4dsi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DSI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DSI FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4dsi]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DSI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DSI FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ht3|3ht3]], [[4dsj|4dsj]], [[4dsk|4dsk]], [[4dsl|4dsl]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DGP:2-DEOXYGUANOSINE-5-MONOPHOSPHATE'>DGP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DPO1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 Geobacillus stearothermophilus])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dsi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dsi OCA], [https://pdbe.org/4dsi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dsi RCSB], [https://www.ebi.ac.uk/pdbsum/4dsi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dsi ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dsi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dsi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4dsi RCSB], [http://www.ebi.ac.uk/pdbsum/4dsi PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/E1C9K5_GEOSE E1C9K5_GEOSE]
 ==See Also==
-*[[DNA polymerase|DNA polymerase]]
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: DNA-directed DNA polymerase]]
 [[Category: Geobacillus stearothermophilus]]
-[[Category: Abdur, R]]
+[[Category: Large Structures]]
-[[Category: Caton-Willians, J]]
+[[Category: Abdur R]]
-[[Category: Gan, J H]]
+[[Category: Caton-Willians J]]
-[[Category: Huang, Z]]
+[[Category: Gan JH]]
-[[Category: Liu, H H]]
+[[Category: Huang Z]]
-[[Category: Sheng, J]]
+[[Category: Liu HH]]
-[[Category: Soares, A S]]
+[[Category: Sheng J]]
-[[Category: Base stacking]]
+[[Category: Soares AS]]
-[[Category: Blunt end extension]]
-[[Category: Calcium cation]]
-[[Category: Dna polymerase]]
-[[Category: Dna synthesis]]
-[[Category: Polymerization fidelity]]
-[[Category: Purine selectivity]]
-[[Category: Transferase-dna complex]]