2kmf: Difference between revisions

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[[Image:2kmf.jpg|left|200px]]


<!--
==Solution Structure of Psb27 from cyanobacterial photosystem II==
The line below this paragraph, containing "STRUCTURE_2kmf", creates the "Structure Box" on the page.
<StructureSection load='2kmf' size='340' side='right'caption='[[2kmf]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KMF FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [https://pdbe.org/2kmf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [https://www.ebi.ac.uk/pdbsum/2kmf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kmf ProSAT]</span></td></tr>
{{STRUCTURE_2kmf|  PDB=2kmf  |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/PSB27_SYNY3 PSB27_SYNY3] Plays a role in the repair and/or biogenesis of the calcium-manganese-oxide cluster on the lumenal face of the thylakoid membrane. Photosystem II (PSII) complexes containing this protein are monomeric, are assembly intermediates lacking the calcium-manganese-oxide cluster and miss some of the lumenal subunits. Probably blocks binding of some of the small lumenal subunits.<ref>PMID:18089572</ref> <ref>PMID:18834146</ref> <ref>PMID:21592967</ref> <ref>PMID:22031695</ref> <ref>PMID:22086423</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/2kmf_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kmf ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Psb27 is a highly conserved component of photosystem II. The three-dimensional structure has a well-defined helical core, composed of four helices arranged in a right-handed up-down-up-down fold, with a less ordered region of the structure located at the N-terminus. The position of conserved residues on the surface suggests conserved functional roles for distinct interconnected features encompassing a P-Phi-P loop, a polar patch spanning helices alpha3 and alpha4, and the N-terminal sequence.


===Solution Structure of Psb27 from cyanobacterial photosystem II===
Solution Structure of Psb27 from Cyanobacterial Photosystem II .,Mabbitt PD, Rautureau GJ, Day CL, Wilbanks SM, Eaton-Rye JJ, Hinds MG Biochemistry. 2009 Aug 27. PMID:19697958<ref>PMID:19697958</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 2kmf" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_19697958}}, adds the Publication Abstract to the page
*[[Photosystem II 3D structures|Photosystem II 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 19697958 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_19697958}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
2KMF is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA].
[[Category: Synechocystis sp. PCC 6803]]
 
[[Category: Day CL]]
==Reference==
[[Category: Eaton-Rye JJ]]
<ref group="xtra">PMID:19697958</ref><references group="xtra"/>
[[Category: Hinds MG]]
[[Category: Synechocystis sp.]]
[[Category: Mabbitt PD]]
[[Category: Day, C L.]]
[[Category: Rautureau GJP]]
[[Category: Eaton-Rye, J J.]]
[[Category: Wilbanks SM]]
[[Category: Hinds, M G.]]
[[Category: Mabbitt, P D.]]
[[Category: Rautureau, G J.P.]]
[[Category: Wilbanks, S M.]]
[[Category: Cyanobacteria]]
[[Category: Helical bundle]]
[[Category: Photosynthesis]]
[[Category: Photosystem ii]]
[[Category: Psb27]]
[[Category: Structure]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep  9 09:17:25 2009''

Latest revision as of 22:12, 29 May 2024

Solution Structure of Psb27 from cyanobacterial photosystem IISolution Structure of Psb27 from cyanobacterial photosystem II

Structural highlights

2kmf is a 1 chain structure with sequence from Synechocystis sp. PCC 6803. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

PSB27_SYNY3 Plays a role in the repair and/or biogenesis of the calcium-manganese-oxide cluster on the lumenal face of the thylakoid membrane. Photosystem II (PSII) complexes containing this protein are monomeric, are assembly intermediates lacking the calcium-manganese-oxide cluster and miss some of the lumenal subunits. Probably blocks binding of some of the small lumenal subunits.[1] [2] [3] [4] [5]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Psb27 is a highly conserved component of photosystem II. The three-dimensional structure has a well-defined helical core, composed of four helices arranged in a right-handed up-down-up-down fold, with a less ordered region of the structure located at the N-terminus. The position of conserved residues on the surface suggests conserved functional roles for distinct interconnected features encompassing a P-Phi-P loop, a polar patch spanning helices alpha3 and alpha4, and the N-terminal sequence.

Solution Structure of Psb27 from Cyanobacterial Photosystem II .,Mabbitt PD, Rautureau GJ, Day CL, Wilbanks SM, Eaton-Rye JJ, Hinds MG Biochemistry. 2009 Aug 27. PMID:19697958[6]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. ↑ Roose JL, Pakrasi HB. The Psb27 protein facilitates manganese cluster assembly in photosystem II. J Biol Chem. 2008 Feb 15;283(7):4044-50. Epub 2007 Dec 18. PMID:18089572 doi:http://dx.doi.org/10.1074/jbc.M708960200
  2. ↑ Bentley FK, Luo H, Dilbeck P, Burnap RL, Eaton-Rye JJ. Effects of inactivating psbM and psbT on photodamage and assembly of photosystem II in Synechocystis sp. PCC 6803. Biochemistry. 2008 Nov 4;47(44):11637-46. doi: 10.1021/bi800804h. Epub 2008 Oct, 4. PMID:18834146 doi:http://dx.doi.org/10.1021/bi800804h
  3. ↑ Liu H, Roose JL, Cameron JC, Pakrasi HB. A genetically tagged Psb27 protein allows purification of two consecutive photosystem II (PSII) assembly intermediates in Synechocystis 6803, a cyanobacterium. J Biol Chem. 2011 Jul 15;286(28):24865-71. doi: 10.1074/jbc.M111.246231. Epub, 2011 May 18. PMID:21592967 doi:http://dx.doi.org/10.1074/jbc.M111.246231
  4. ↑ Liu H, Huang RY, Chen J, Gross ML, Pakrasi HB. Psb27, a transiently associated protein, binds to the chlorophyll binding protein CP43 in photosystem II assembly intermediates. Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18536-41. doi:, 10.1073/pnas.1111597108. Epub 2011 Oct 26. PMID:22031695 doi:http://dx.doi.org/10.1073/pnas.1111597108
  5. ↑ Komenda J, Knoppova J, Kopecna J, Sobotka R, Halada P, Yu J, Nickelsen J, Boehm M, Nixon PJ. The Psb27 assembly factor binds to the CP43 complex of photosystem II in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol. 2012 Jan;158(1):476-86. doi: 10.1104/pp.111.184184. Epub 2011 Nov , 15. PMID:22086423 doi:http://dx.doi.org/10.1104/pp.111.184184
  6. ↑ Mabbitt PD, Rautureau GJ, Day CL, Wilbanks SM, Eaton-Rye JJ, Hinds MG. Solution Structure of Psb27 from Cyanobacterial Photosystem II . Biochemistry. 2009 Aug 27. PMID:19697958 doi:10.1021/bi901309c
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