2jzt: Difference between revisions

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-[[Image:2jzt.jpg|left|200px]]
- {{Structure
+==Solution NMR structure of Q8ZP25_SALTY from Salmonella typhimurium. Northeast Structural Genomics Consortium target StR70==
-|PDB= 2jzt |SIZE=350|CAPTION= <scene name='initialview01'>2jzt</scene>
+<StructureSection load='2jzt' size='340' side='right'caption='[[2jzt]]' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[2jzt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JZT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JZT FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-|GENE= STM1790 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 Salmonella typhimurium LT2])
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jzt OCA], [https://pdbe.org/2jzt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jzt RCSB], [https://www.ebi.ac.uk/pdbsum/2jzt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jzt ProSAT], [https://www.topsan.org/Proteins/NESGC/2jzt TOPSAN]</span></td></tr>
-|DOMAIN=
+</table>
-|RELATEDENTRY=
+== Function ==
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jzt OCA], [http://www.ebi.ac.uk/pdbsum/2jzt PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2jzt RCSB]</span>
+[https://www.uniprot.org/uniprot/Q8ZP25_SALTY Q8ZP25_SALTY]
-}}
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jz/2jzt_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jzt ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The structure of the 142-residue protein Q8ZP25_SALTY encoded in the genome of Salmonella typhimurium LT2 was determined independently by NMR and X-ray crystallography, and the structure of the 140-residue protein HYAE_ECOLI encoded in the genome of Escherichia coli was determined by NMR. The two proteins belong to Pfam (Finn et al. 34:D247-D251, 2006) PF07449, which currently comprises 50 members, and belongs itself to the 'thioredoxin-like clan'. However, protein HYAE_ECOLI and the other proteins of Pfam PF07449 do not contain the canonical Cys-X-X-Cys active site sequence motif of thioredoxin. Protein HYAE_ECOLI was previously classified as a [NiFe] hydrogenase-1 specific chaperone interacting with the twin-arginine translocation (Tat) signal peptide. The structures presented here exhibit the expected thioredoxin-like fold and support the view that members of Pfam family PF07449 specifically interact with Tat signal peptides.
-'''Solution NMR structure of Q8ZP25_SALTY from Salmonella typhimurium. Northeast Structural Genomics Consortium target StR70'''
+Protein chaperones Q8ZP25_SALTY from Salmonella typhimurium and HYAE_ECOLI from Escherichia coli exhibit thioredoxin-like structures despite lack of canonical thioredoxin active site sequence motif.,Parish D, Benach J, Liu G, Singarapu KK, Xiao R, Acton T, Su M, Bansal S, Prestegard JH, Hunt J, Montelione GT, Szyperski T J Struct Funct Genomics. 2008 Dec;9(1-4):41-9. Epub 2008 Nov 26. PMID:19039680<ref>PMID:19039680</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-==About this Structure==
+</div>
-JZT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium_lt2 Salmonella typhimurium lt2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JZT OCA].
+<div class="pdbe-citations 2jzt" style="background-color:#fffaf0;"></div>
-[[Category: Salmonella typhimurium lt2]]
+== References ==
-[[Category: Single protein]]
+<references/>
-[[Category: Acton, T B.]]
+__TOC__
-[[Category: Bonsal, S.]]
+</StructureSection>
-[[Category: Cunningham, K.]]
+[[Category: Large Structures]]
-[[Category: Ho, C.]]
+[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-[[Category: Liu, G.]]
+[[Category: Acton T]]
-[[Category: Montelione, G T.]]
+[[Category: Bansal S]]
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+[[Category: Cunningham K]]
-[[Category: Parish, D.]]
+[[Category: Ho C]]
-[[Category: Prestegard, J.]]
+[[Category: Liu G]]
-[[Category: Shen, Y.]]
+[[Category: Montelione GT]]
-[[Category: Swapna, G V.T.]]
+[[Category: Parish D]]
-[[Category: Szyperski, T.]]
+[[Category: Prestegard JH]]
-[[Category: Xiao, R.]]
+[[Category: Shen Y]]
-[[Category: chaperone]]
+[[Category: Swapna GVT]]
-[[Category: isomerase]]
+[[Category: Szyperski T]]
-[[Category: nesg]]
+[[Category: Xiao R]]
-[[Category: northeast structural genomics consortium]]
-[[Category: protein structure initiative]]
-[[Category: psi-2]]
-[[Category: putative [nife] hydrogenase assembly]]
-[[Category: str70]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:02:52 2008''