2gqe: Difference between revisions

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-{{Seed}}
-[[Image:2gqe.png|left|200px]]
-<!--
+==Molecular characterization of the Ran binding zinc finger domain==
-The line below this paragraph, containing "STRUCTURE_2gqe", creates the "Structure Box" on the page.
+<StructureSection load='2gqe' size='340' side='right'caption='[[2gqe]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2gqe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GQE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GQE FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_2gqe|  PDB=2gqe  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gqe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gqe OCA], [https://pdbe.org/2gqe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gqe RCSB], [https://www.ebi.ac.uk/pdbsum/2gqe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gqe ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/NU153_HUMAN NU153_HUMAN] Possible DNA-binding subunit of the nuclear pore complex (NPC). The repeat-containing domain may be involved in anchoring components of the pore complex to the pore membrane.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/2gqe_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gqe ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The nuclear pore complex is the gateway for selective traffic between the nucleus and cytoplasm. To learn how building blocks of the pore can create specific docking sites for transport receptors and regulatory factors, we have studied a zinc finger module present in multiple copies within the nuclear pores of higher eukaryotes. All four zinc fingers of human Nup153 were found to bind the small GTPase Ran with dissociation constants ranging between 5 and 40 mum. In addition a fragment of Nup153 encompassing the four tandem zinc fingers was found to bind Ran with similar affinity. NMR structural studies revealed that a representative Nup153 zinc finger adopts the same zinc ribbon structure as the previously characterized Npl4 NZF module. Ran binding was mediated by a three-amino acid motif (Leu(13)/Val(14)/Asn(25)) located within the two zinc coordination loops. Nup153 ZnFs bound GDP and GTP forms of Ran with similar affinities, indicating that this interaction is not influenced by a nucleotide-dependent conformational switch. Taken together, these studies elucidate the Ran-binding interface on Nup153 and, more broadly, provide insight into the versatility of this zinc finger binding module.
-===Molecular characterization of the Ran binding zinc finger domain===
+Molecular characterization of the Ran-binding zinc finger domain of Nup153.,Higa MM, Alam SL, Sundquist WI, Ullman KS J Biol Chem. 2007 Jun 8;282(23):17090-100. Epub 2007 Apr 10. PMID:17426026<ref>PMID:17426026</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2gqe" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_17426026}}, adds the Publication Abstract to the page
+*[[Nucleoporin 3D structures|Nucleoporin 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 17426026 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_17426026}}
+__TOC__
+</StructureSection>
-==About this Structure==
-GQE is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GQE OCA].
-==Reference==
-<ref group="xtra">PMID:17426026</ref><references group="xtra"/>
 [[Category: Homo sapiens]]
-[[Category: Alam, S L.]]
+[[Category: Large Structures]]
-[[Category: Higa, M M.]]
+[[Category: Alam SL]]
-[[Category: Sundquist, W I.]]
+[[Category: Higa MM]]
-[[Category: Ullman, K S.]]
+[[Category: Sundquist WI]]
-[[Category: Nuclear pore]]
+[[Category: Ullman KS]]
-[[Category: Nucleoporin]]
-[[Category: Nup153]]
-[[Category: Nup358]]
-[[Category: Pore]]
-[[Category: Ran]]
-[[Category: Ranbp2]]
-[[Category: Transport]]
-[[Category: Zinc finger]]
-[[Category: Zinc knuckle]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:32:10 2009''