2eqz: Difference between revisions

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==Solution structure of the first HMG-box domain from high mobility group protein B3==
==Solution structure of the first HMG-box domain from high mobility group protein B3==
<StructureSection load='2eqz' size='340' side='right' caption='[[2eqz]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
<StructureSection load='2eqz' size='340' side='right'caption='[[2eqz]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2eqz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EQZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EQZ FirstGlance]. <br>
<table><tr><td colspan='2'>[[2eqz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EQZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EQZ FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HMGB3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2eqz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eqz OCA], [http://pdbe.org/2eqz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2eqz RCSB], [http://www.ebi.ac.uk/pdbsum/2eqz PDBsum], [http://www.topsan.org/Proteins/RSGI/2eqz TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2eqz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eqz OCA], [https://pdbe.org/2eqz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2eqz RCSB], [https://www.ebi.ac.uk/pdbsum/2eqz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2eqz ProSAT], [https://www.topsan.org/Proteins/RSGI/2eqz TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/HMGB3_HUMAN HMGB3_HUMAN]] Binds preferentially single-stranded DNA and unwinds double stranded DNA (By similarity).  
[https://www.uniprot.org/uniprot/HMGB3_HUMAN HMGB3_HUMAN] Binds preferentially single-stranded DNA and unwinds double stranded DNA (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eq/2eqz_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eq/2eqz_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2eqz ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>


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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Human]]
[[Category: Homo sapiens]]
[[Category: Hayahsi, F]]
[[Category: Large Structures]]
[[Category: Kurosaki, C]]
[[Category: Hayahsi F]]
[[Category: Qin, X R]]
[[Category: Kurosaki C]]
[[Category: Structural genomic]]
[[Category: Qin XR]]
[[Category: Yokoyama, S]]
[[Category: Yokoyama S]]
[[Category: Yoshida, M]]
[[Category: Yoshida M]]
[[Category: High mobility group protein b3]]
[[Category: Hmg-box domain]]
[[Category: Mobility group protein 2a]]
[[Category: Mobility group protein 4]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Rsgi]]
[[Category: Transcription]]

Latest revision as of 21:55, 29 May 2024

Solution structure of the first HMG-box domain from high mobility group protein B3Solution structure of the first HMG-box domain from high mobility group protein B3

Structural highlights

2eqz is a 1 chain structure with sequence from Homo sapiens. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

HMGB3_HUMAN Binds preferentially single-stranded DNA and unwinds double stranded DNA (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

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