2eqy: Difference between revisions

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-{{Seed}}
-[[Image:2eqy.png|left|200px]]
-<!--
+==Solution structure of the ARID domain of Jarid1b protein==
-The line below this paragraph, containing "STRUCTURE_2eqy", creates the "Structure Box" on the page.
+<StructureSection load='2eqy' size='340' side='right'caption='[[2eqy]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2eqy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EQY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EQY FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2eqy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eqy OCA], [https://pdbe.org/2eqy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2eqy RCSB], [https://www.ebi.ac.uk/pdbsum/2eqy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2eqy ProSAT], [https://www.topsan.org/Proteins/RSGI/2eqy TOPSAN]</span></td></tr>
-{{STRUCTURE_2eqy|  PDB=2eqy  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/KDM5B_MOUSE KDM5B_MOUSE] Histone demethylase that demethylates 'Lys-4' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-9' or H3 'Lys-27'. Demethylates trimethylated, dimethylated and monomethylated H3 'Lys-4'. Acts as a transcriptional corepressor for FOXG1B and PAX9.<ref>PMID:17320160</ref> <ref>PMID:17310255</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eq/2eqy_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2eqy ConSurf].
+<div style="clear:both"></div>
-===Solution structure of the ARID domain of Jarid1b protein===
+==See Also==
+*[[Lysine-specific histone demethylase 3D structures|Lysine-specific histone demethylase 3D structures]]
+== References ==
-==About this Structure==
+<references/>
-EQY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EQY OCA].
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Mus musculus]]
-[[Category: Single protein]]
+[[Category: Inoue M]]
-[[Category: Inoue, M.]]
+[[Category: Kigawa T]]
-[[Category: Kigawa, T.]]
+[[Category: Muto Y]]
-[[Category: Muto, Y.]]
+[[Category: Shirouzu M]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Suzuki S]]
-[[Category: Shirouzu, M.]]
+[[Category: Tanabe W]]
-[[Category: Suzuki, S.]]
+[[Category: Terada T]]
-[[Category: Tanabe, W.]]
+[[Category: Yokoyama S]]
-[[Category: Terada, T.]]
-[[Category: Yokoyama, S.]]
-[[Category: Arid domain]]
-[[Category: Dna binding protein]]
-[[Category: National project on protein structural and functional analyse]]
-[[Category: Nppsfa]]
-[[Category: Riken structural genomics/proteomics initiative]]
-[[Category: Rsgi]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 20:57:37 2008''