2elh: Difference between revisions

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 ==Solution structure of the CENP-B N-terminal DNA-binding domain of fruit fly distal antenna CG11849-PA==
-<StructureSection load='2elh' size='340' side='right' caption='[[2elh]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2elh' size='340' side='right'caption='[[2elh]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2elh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Drome Drome]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ELH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ELH FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2elh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ELH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ELH FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dan ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7227 DROME])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2elh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2elh OCA], [http://pdbe.org/2elh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2elh RCSB], [http://www.ebi.ac.uk/pdbsum/2elh PDBsum], [http://www.topsan.org/Proteins/RSGI/2elh TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2elh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2elh OCA], [https://pdbe.org/2elh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2elh RCSB], [https://www.ebi.ac.uk/pdbsum/2elh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2elh ProSAT], [https://www.topsan.org/Proteins/RSGI/2elh TOPSAN]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/DAN_DROME DAN_DROME]] Probable transcription factor with a role in the retinal determination (RD) network. Regulates ato expression and is required for normal R8 induction and differentiation. Danr appears to repress Dan expression, but Dan is required for Danr expression anterior to the morphogenetic furrow (MF). Dan and Danr lie downstream of so and require dac function for highest levels of expression. Contributes to differentiation of antenna-specific characteristics; effector gene that acts downstream of homothorax (hth), Distal-less (Dll), cut (ct) and spineless (ss) genes to control differentiation of distal antennal structures.<ref>PMID:12571108</ref> <ref>PMID:17493605</ref>
+[https://www.uniprot.org/uniprot/DAN_DROME DAN_DROME] Probable transcription factor with a role in the retinal determination (RD) network. Regulates ato expression and is required for normal R8 induction and differentiation. Danr appears to repress Dan expression, but Dan is required for Danr expression anterior to the morphogenetic furrow (MF). Dan and Danr lie downstream of so and require dac function for highest levels of expression. Contributes to differentiation of antenna-specific characteristics; effector gene that acts downstream of homothorax (hth), Distal-less (Dll), cut (ct) and spineless (ss) genes to control differentiation of distal antennal structures.<ref>PMID:12571108</ref> <ref>PMID:17493605</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/el/2elh_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/el/2elh_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2elh ConSurf].
 <div style="clear:both"></div>
 == References ==
@@ Line 22: / Line 23: @@
 __TOC__
 </StructureSection>
-[[Category: Drome]]
+[[Category: Drosophila melanogaster]]
-[[Category: Harada, T]]
+[[Category: Large Structures]]
-[[Category: Kigawa, T]]
+[[Category: Harada T]]
-[[Category: Koshiba, S]]
+[[Category: Kigawa T]]
-[[Category: Structural genomic]]
+[[Category: Koshiba S]]
-[[Category: Tanaka, A]]
+[[Category: Tanaka A]]
-[[Category: Tochio, N]]
+[[Category: Tochio N]]
-[[Category: Umehara, T]]
+[[Category: Umehara T]]
-[[Category: Watanabe, S]]
+[[Category: Watanabe S]]
-[[Category: Yokoyama, S]]
+[[Category: Yokoyama S]]
-[[Category: Dna binding protein]]
-[[Category: Ld40883p]]
-[[Category: National project on protein structural and functional analyse]]
-[[Category: Nppsfa]]
-[[Category: Rsgi]]