2dkm: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-{{Seed}}
-[[Image:2dkm.png|left|200px]]
-<!--
+==Solution structures of the fn3 domain of human collagen alpha-1(XX) chain==
-The line below this paragraph, containing "STRUCTURE_2dkm", creates the "Structure Box" on the page.
+<StructureSection load='2dkm' size='340' side='right'caption='[[2dkm]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2dkm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DKM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DKM FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dkm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dkm OCA], [https://pdbe.org/2dkm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dkm RCSB], [https://www.ebi.ac.uk/pdbsum/2dkm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dkm ProSAT], [https://www.topsan.org/Proteins/RSGI/2dkm TOPSAN]</span></td></tr>
-{{STRUCTURE_2dkm|  PDB=2dkm  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/COKA1_HUMAN COKA1_HUMAN] Probable collagen protein.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/2dkm_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dkm ConSurf].
+<div style="clear:both"></div>
-===Solution structures of the fn3 domain of human collagen alpha-1(XX) chain===
+==See Also==
+*[[Collagen 3D structures|Collagen 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-DKM is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DKM OCA].
 [[Category: Homo sapiens]]
-[[Category: Inoue, M.]]
+[[Category: Large Structures]]
-[[Category: Kigawa, T.]]
+[[Category: Inoue M]]
-[[Category: Koshiba, S.]]
+[[Category: Kigawa T]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Koshiba S]]
-[[Category: Saito, K.]]
+[[Category: Saito K]]
-[[Category: Sato, M.]]
+[[Category: Sato M]]
-[[Category: Yokoyama, S.]]
+[[Category: Yokoyama S]]
-[[Category: Fn3 domain]]
-[[Category: Kiaa1510]]
-[[Category: National project on protein structural and functional analyse]]
-[[Category: Nppsfa]]
-[[Category: Riken structural genomics/proteomics initiative]]
-[[Category: Rsgi]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:42:05 2008''