2dkm: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(15 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2dkm.gif|left|200px]]<br /><applet load="2dkm" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2dkm" />
'''Solution structures of the fn3 domain of human collagen alpha-1(XX) chain'''<br />


==About this Structure==
==Solution structures of the fn3 domain of human collagen alpha-1(XX) chain==
2DKM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DKM OCA].  
<StructureSection load='2dkm' size='340' side='right'caption='[[2dkm]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2dkm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DKM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DKM FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dkm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dkm OCA], [https://pdbe.org/2dkm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dkm RCSB], [https://www.ebi.ac.uk/pdbsum/2dkm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dkm ProSAT], [https://www.topsan.org/Proteins/RSGI/2dkm TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/COKA1_HUMAN COKA1_HUMAN] Probable collagen protein.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/2dkm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dkm ConSurf].
<div style="clear:both"></div>
 
==See Also==
*[[Collagen 3D structures|Collagen 3D structures]]
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Inoue, M.]]
[[Category: Inoue M]]
[[Category: Kigawa, T.]]
[[Category: Kigawa T]]
[[Category: Koshiba, S.]]
[[Category: Koshiba S]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Saito K]]
[[Category: Saito, K.]]
[[Category: Sato M]]
[[Category: Sato, M.]]
[[Category: Yokoyama S]]
[[Category: Yokoyama, S.]]
[[Category: fn3 domain]]
[[Category: kiaa1510]]
[[Category: national project on protein structural and functional analyses]]
[[Category: nppsfa]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomics]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:59:46 2008''

Latest revision as of 21:42, 29 May 2024

Solution structures of the fn3 domain of human collagen alpha-1(XX) chainSolution structures of the fn3 domain of human collagen alpha-1(XX) chain

Structural highlights

2dkm is a 1 chain structure with sequence from Homo sapiens. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

COKA1_HUMAN Probable collagen protein.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA