2d7y: Difference between revisions

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-[[Image:2d7y.gif|left|200px]]
- {{Structure
+==Aspartate Aminotransferase Mutant MA==
-|PDB= 2d7y |SIZE=350|CAPTION= <scene name='initialview01'>2d7y</scene>, resolution 2.66&Aring;
+<StructureSection load='2d7y' size='340' side='right'caption='[[2d7y]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=PLP:PYRIDOXAL-5&#39;-PHOSPHATE'>PLP</scene>
+<table><tr><td colspan='2'>[[2d7y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D7Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D7Y FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.66&#8491;</td></tr>
-|GENE= aspC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-|DOMAIN=
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d7y OCA], [https://pdbe.org/2d7y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d7y RCSB], [https://www.ebi.ac.uk/pdbsum/2d7y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d7y ProSAT]</span></td></tr>
-|RELATEDENTRY=[[2d5y|2D5Y]], [[2d61|2D61]], [[2d63|2D63]], [[2d64|2D64]], [[2d65|2D65]], [[2d66|2D66]], [[2d7z|2D7Z]]
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d7y OCA], [http://www.ebi.ac.uk/pdbsum/2d7y PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2d7y RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/AAT_ECOLI AAT_ECOLI]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/2d7y_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d7y ConSurf].
+<div style="clear:both"></div>
-'''Aspartate Aminotransferase Mutant MA'''
+==See Also==
+*[[Aspartate aminotransferase 3D structures|Aspartate aminotransferase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-D7Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D7Y OCA].
-[[Category: Aspartate transaminase]]
 [[Category: Escherichia coli]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Kuramitsu, S.]]
+[[Category: Kuramitsu S]]
-[[Category: Masui, R.]]
+[[Category: Masui R]]
-[[Category: Nakagawa, N.]]
+[[Category: Nakagawa N]]
-[[Category: Tada, H.]]
+[[Category: Tada H]]
-[[Category: Tanaka, Y.]]
+[[Category: Tanaka Y]]
-[[Category: Yano, T.]]
+[[Category: Yano T]]
-[[Category: aspartate aminotransferase]]
-[[Category: directed evolution]]
-[[Category: protein design]]
-[[Category: protein enginnering]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:31:10 2008''