6rdp: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:


==Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1C, focussed refinement of F1 head and rotor==
==Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1C, focussed refinement of F1 head and rotor==
<StructureSection load='6rdp' size='340' side='right'caption='[[6rdp]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<SX load='6rdp' size='340' side='right' viewer='molstar' caption='[[6rdp]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6rdp]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Polytomella_sp._pringsheim_198.80 Polytomella sp. pringsheim 198.80]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RDP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RDP FirstGlance]. <br>
<table><tr><td colspan='2'>[[6rdp]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Polytomella_sp._Pringsheim_198.80 Polytomella sp. Pringsheim 198.80]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RDP FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=7.1.2.2 7.1.2.2] </span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rdp OCA], [http://pdbe.org/6rdp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rdp RCSB], [http://www.ebi.ac.uk/pdbsum/6rdp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rdp ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rdp OCA], [https://pdbe.org/6rdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rdp RCSB], [https://www.ebi.ac.uk/pdbsum/6rdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rdp ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/A0ZW40_9CHLO A0ZW40_9CHLO]] Produces ATP from ADP in the presence of a proton gradient across the membrane.[RuleBase:RU003551] [[http://www.uniprot.org/uniprot/A0ZW41_9CHLO A0ZW41_9CHLO]] Produces ATP from ADP in the presence of a proton gradient across the membrane.[RuleBase:RU003553]  
[https://www.uniprot.org/uniprot/D7P7X5_9CHLO D7P7X5_9CHLO]  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 6rdp" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6rdp" style="background-color:#fffaf0;"></div>
==See Also==
*[[ATPase 3D structures|ATPase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</SX>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Polytomella sp. pringsheim 198 80]]
[[Category: Polytomella sp. Pringsheim 198 80]]
[[Category: Klusch, N]]
[[Category: Klusch N]]
[[Category: Kuhlbrandt, W]]
[[Category: Kuhlbrandt W]]
[[Category: Murphy, B J]]
[[Category: Murphy BJ]]
[[Category: Yildiz, O]]
[[Category: Yildiz O]]
[[Category: Mitochondrial atp synthase dimer flexible coupling cryoem]]
[[Category: Proton transport]]

Latest revision as of 13:10, 22 May 2024

Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1C, focussed refinement of F1 head and rotorCryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1C, focussed refinement of F1 head and rotor

6rdp, resolution 2.80Å

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA