2bai: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2bai.gif|left|200px]]
-<!--
+==The Zinc finger domain of Mengovirus Leader polypeptide==
-The line below this paragraph, containing "STRUCTURE_2bai", creates the "Structure Box" on the page.
+<StructureSection load='2bai' size='340' side='right'caption='[[2bai]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2bai]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mengo_virus Mengo virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BAI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BAI FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_2bai|  PDB=2bai  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bai FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bai OCA], [https://pdbe.org/2bai PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bai RCSB], [https://www.ebi.ac.uk/pdbsum/2bai PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bai ProSAT], [https://www.topsan.org/Proteins/CESG/2bai TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/POLG_ENMG3 POLG_ENMG3] Capsid proteins VP1, VP2, VP3 and VP4 form a closed capsid enclosing the viral positive strand RNA genome. VP4 lies on the inner surface of the protein shell formed by VP1, VP2 and VP3. All the three latter proteins contain a beta-sheet structure called beta-barrel jelly roll. Together they form an icosahedral capsid (T=3) composed of 60 copies of each VP1, VP2, and VP3, with a diameter of approximately 300 Angstroms. VP1 is situated at the 12 fivefold axes, whereas VP2 and VP3 are located at the quasi-sixfold axes (By similarity).  Protein VP0: VP0 precursor is a component of immature procapsids (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/2bai_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bai ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The Leader protein is a defining feature of picornaviruses from the Cardiovirus genus. This protein was recently shown to inhibit cellular nucleocytoplasmic transport through an activity mapped to its zinc-binding region. Here we report the three-dimensional solution structure determined by nuclear magnetic resonance (NMR) spectroscopy of this domain (residues 5-28) from mengovirus. The domain forms a CHCC zinc-finger with a fold comprising a beta-hairpin followed by a short alpha-helix that can adopt two different conformations. This structure is divergent from those of other eukaryotic zinc-fingers and instead resembles motifs found in a group of DNA-binding proteins from Archaea.
-'''The Zinc finger domain of Mengovirus Leader polypeptide'''
+NMR structure of the mengovirus Leader protein zinc-finger domain.,Cornilescu CC, Porter FW, Zhao KQ, Palmenberg AC, Markley JL FEBS Lett. 2008 Mar 19;582(6):896-900. Epub 2008 Feb 20. PMID:18291103<ref>PMID:18291103</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-==About this Structure==
+</div>
-BAI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mengo_virus Mengo virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BAI OCA].
+<div class="pdbe-citations 2bai" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Mengo virus]]
-[[Category: Single protein]]
+[[Category: Cornilescu CC]]
-[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
+[[Category: Lee MS]]
-[[Category: Cornilescu, C C.]]
+[[Category: Markley JL]]
-[[Category: Lee, M S.]]
+[[Category: Palmenberg AC]]
-[[Category: Markley, J L.]]
+[[Category: Porter FW]]
-[[Category: Palmenberg, A C.]]
+[[Category: Qin Z]]
-[[Category: Porter, F W.]]
-[[Category: Qin, Z.]]
-[[Category: Cardiovirus]]
-[[Category: Center for eukaryotic structural genomic]]
-[[Category: Cesg]]
-[[Category: Mengovirus]]
-[[Category: Nmr]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]
-[[Category: Virus]]
-[[Category: Viruse]]
-[[Category: Zinc finger domain]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 20:02:34 2008''