2bai: Difference between revisions

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 ==The Zinc finger domain of Mengovirus Leader polypeptide==
-<StructureSection load='2bai' size='340' side='right' caption='[[2bai]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2bai' size='340' side='right'caption='[[2bai]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2bai]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enmgo Enmgo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BAI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BAI FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2bai]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mengo_virus Mengo virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BAI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BAI FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bai FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bai OCA], [http://pdbe.org/2bai PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bai RCSB], [http://www.ebi.ac.uk/pdbsum/2bai PDBsum], [http://www.topsan.org/Proteins/CESG/2bai TOPSAN]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bai FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bai OCA], [https://pdbe.org/2bai PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bai RCSB], [https://www.ebi.ac.uk/pdbsum/2bai PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bai ProSAT], [https://www.topsan.org/Proteins/CESG/2bai TOPSAN]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/POLG_ENMG3 POLG_ENMG3]] Capsid proteins VP1, VP2, VP3 and VP4 form a closed capsid enclosing the viral positive strand RNA genome. VP4 lies on the inner surface of the protein shell formed by VP1, VP2 and VP3. All the three latter proteins contain a beta-sheet structure called beta-barrel jelly roll. Together they form an icosahedral capsid (T=3) composed of 60 copies of each VP1, VP2, and VP3, with a diameter of approximately 300 Angstroms. VP1 is situated at the 12 fivefold axes, whereas VP2 and VP3 are located at the quasi-sixfold axes (By similarity).  Protein VP0: VP0 precursor is a component of immature procapsids (By similarity).
+[https://www.uniprot.org/uniprot/POLG_ENMG3 POLG_ENMG3] Capsid proteins VP1, VP2, VP3 and VP4 form a closed capsid enclosing the viral positive strand RNA genome. VP4 lies on the inner surface of the protein shell formed by VP1, VP2 and VP3. All the three latter proteins contain a beta-sheet structure called beta-barrel jelly roll. Together they form an icosahedral capsid (T=3) composed of 60 copies of each VP1, VP2, and VP3, with a diameter of approximately 300 Angstroms. VP1 is situated at the 12 fivefold axes, whereas VP2 and VP3 are located at the quasi-sixfold axes (By similarity).  Protein VP0: VP0 precursor is a component of immature procapsids (By similarity).
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/2bai_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/2bai_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bai ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 27: / Line 29: @@
 </div>
 <div class="pdbe-citations 2bai" style="background-color:#fffaf0;"></div>
-==See Also==
-*[[Zinc Fingers|Zinc Fingers]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Enmgo]]
+[[Category: Large Structures]]
-[[Category: Structural genomic]]
+[[Category: Mengo virus]]
-[[Category: Cornilescu, C C]]
+[[Category: Cornilescu CC]]
-[[Category: Lee, M S]]
+[[Category: Lee MS]]
-[[Category: Markley, J L]]
+[[Category: Markley JL]]
-[[Category: Palmenberg, A C]]
+[[Category: Palmenberg AC]]
-[[Category: Porter, F W]]
+[[Category: Porter FW]]
-[[Category: Qin, Z]]
+[[Category: Qin Z]]
-[[Category: Cardiovirus]]
-[[Category: Cesg]]
-[[Category: Mengovirus]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Viral protein]]
-[[Category: Virus]]
-[[Category: Viruse]]
-[[Category: Zinc finger domain]]