1rfl: Difference between revisions

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OCA

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 ==NMR data driven structural model of G-domain of MnmE protein==
-<StructureSection load='1rfl' size='340' side='right' caption='[[1rfl]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='1rfl' size='340' side='right'caption='[[1rfl]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1rfl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RFL FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1rfl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RFL FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TRME, THDF, MNME, B3706 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rfl RCSB], [http://www.ebi.ac.uk/pdbsum/1rfl PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfl OCA], [https://pdbe.org/1rfl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rfl RCSB], [https://www.ebi.ac.uk/pdbsum/1rfl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rfl ProSAT]</span></td></tr>
-<table>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/MNME_ECOLI MNME_ECOLI] Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/1rfl_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/1rfl_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rfl ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 24: / Line 27: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 1rfl" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
@@ Line 29: / Line 33: @@
 </StructureSection>
 [[Category: Escherichia coli]]
-[[Category: Armengod, M E.]]
+[[Category: Large Structures]]
-[[Category: Celda, B.]]
+[[Category: Armengod ME]]
-[[Category: Esteve, V.]]
+[[Category: Celda B]]
-[[Category: Martinez-Vicente, M.]]
+[[Category: Esteve V]]
-[[Category: Monleon, D.]]
+[[Category: Martinez-Vicente M]]
-[[Category: Yim, L.]]
+[[Category: Monleon D]]
-[[Category: Alpha/beta]]
+[[Category: Yim L]]
-[[Category: Gtpase domain]]
-[[Category: Unknown function]]