1ozi: Difference between revisions

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-{{Seed}}
-[[Image:1ozi.png|left|200px]]
-<!--
+==The alternatively spliced PDZ2 domain of PTP-BL==
-The line below this paragraph, containing "STRUCTURE_1ozi", creates the "Structure Box" on the page.
+<StructureSection load='1ozi' size='340' side='right'caption='[[1ozi]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ozi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OZI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OZI FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ozi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ozi OCA], [https://pdbe.org/1ozi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ozi RCSB], [https://www.ebi.ac.uk/pdbsum/1ozi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ozi ProSAT]</span></td></tr>
-{{STRUCTURE_1ozi|  PDB=1ozi  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PTN13_MOUSE PTN13_MOUSE] Tyrosine phosphatase which regulates negatively FAS-induced apoptosis and NGFR-mediated pro-apoptotic signaling.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oz/1ozi_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ozi ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+PTP-BL is a large phosphatase that is implicated in cellular processes as diverse as cytokinesis, actin-cytoskeletal rearrangement, and apoptosis. Five PDZ domains mediate its cellular role by binding to the C termini of target proteins, forming multiprotein complexes. The second PDZ domain (PDZ2) binds to the C termini of the tumor suppressor protein APC and the LIM domain-containing protein RIL; however, in one splice variant, PDZ2as, a 5 residue insertion abrogates this binding. The insert causes distinct structural and dynamical changes in the alternatively spliced PDZ2: enlarging the L1 loop between beta2 and beta3, both lengthening and changing the orientation of the alpha2 helix, giving the base of the binding pocket less flexibility to accommodate ligands, and destabilizing the entire domain. These changes render the binding pocket incapable of binding C termini, possibly having implications in the functional role of PTP-BL.
-===The alternatively spliced PDZ2 domain of PTP-BL===
+A closed binding pocket and global destabilization modify the binding properties of an alternatively spliced form of the second PDZ domain of PTP-BL.,Walma T, Aelen J, Nabuurs SB, Oostendorp M, van den Berk L, Hendriks W, Vuister GW Structure. 2004 Jan;12(1):11-20. PMID:14725761<ref>PMID:14725761</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 1ozi" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_14725761}}, adds the Publication Abstract to the page
+*[[Tyrosine phosphatase 3D structures|Tyrosine phosphatase 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 14725761 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_14725761}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-OZI is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OZI OCA].
-==Reference==
-<ref group="xtra">PMID:14725761</ref><references group="xtra"/>
 [[Category: Mus musculus]]
-[[Category: Protein-tyrosine-phosphatase]]
+[[Category: Aelen J]]
-[[Category: Aelen, J.]]
+[[Category: Hendriks W]]
-[[Category: Berk, L van den.]]
+[[Category: Oostendorp M]]
-[[Category: Hendriks, W.]]
+[[Category: Vuister GW]]
-[[Category: Oostendorp, M.]]
+[[Category: Walma T]]
-[[Category: Vuister, G W.]]
+[[Category: Van den Berk L]]
-[[Category: Walma, T.]]
-[[Category: Adenomatous polyposis coli]]
-[[Category: All-beta protein]]
-[[Category: Apc]]
-[[Category: Interaction with c-termini]]
-[[Category: Pdz domain]]
-[[Category: Reversion induced lim]]
-[[Category: Ril]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 20:20:40 2009''