1kjk: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==Solution structure of the lambda integrase amino-terminal domain==
-<StructureSection load='1kjk' size='340' side='right' caption='[[1kjk]], [[NMR_Ensembles_of_Models | 25 NMR models]]' scene=''>
+<StructureSection load='1kjk' size='340' side='right'caption='[[1kjk]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1kjk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_lambda Enterobacteria phage lambda]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KJK FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1kjk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_Lambda Escherichia virus Lambda]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KJK FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kjk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kjk RCSB], [http://www.ebi.ac.uk/pdbsum/1kjk PDBsum]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<table>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kjk OCA], [https://pdbe.org/1kjk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kjk RCSB], [https://www.ebi.ac.uk/pdbsum/1kjk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kjk ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/VINT_LAMBD VINT_LAMBD] Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kj/1kjk_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kj/1kjk_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kjk ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 23: / Line 27: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 1kjk" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Phage integrase|Phage integrase]]
+*[[Retroviral integrase 3D structures|Retroviral integrase 3D structures]]
-*[[Resolvase|Resolvase]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Enterobacteria phage lambda]]
+[[Category: Escherichia virus Lambda]]
-[[Category: Clubb, R T.]]
+[[Category: Large Structures]]
-[[Category: Landy, A.]]
+[[Category: Clubb RT]]
-[[Category: Sarkar, D.]]
+[[Category: Landy A]]
-[[Category: Wojciak, J M.]]
+[[Category: Sarkar D]]
-[[Category: Dna recombination]]
+[[Category: Wojciak JM]]
-[[Category: Dna-binding domain]]
-[[Category: Integrase]]
-[[Category: Three-stranded beta-sheet]]
-[[Category: Viral protein]]