1f54: Difference between revisions

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-[[Image:1f54.png|left|200px]]
-<!--
+==SOLUTION STRUCTURE OF THE APO N-TERMINAL DOMAIN OF YEAST CALMODULIN==
-The line below this paragraph, containing "STRUCTURE_1f54", creates the "Structure Box" on the page.
+<StructureSection load='1f54' size='340' side='right'caption='[[1f54]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1f54]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F54 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F54 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f54 OCA], [https://pdbe.org/1f54 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f54 RCSB], [https://www.ebi.ac.uk/pdbsum/1f54 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f54 ProSAT]</span></td></tr>
-{{STRUCTURE_1f54|  PDB=1f54  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CALM_YEAST CALM_YEAST] Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. Component of the spindle pole body (SPB) required for the proper execution of spindle pole body (SPB) duplication.<ref>PMID:10339566</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f5/1f54_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f54 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+We have determined solution structures of the N-terminal half domain (N-domain) of yeast calmodulin (YCM0-N, residues 1-77) in the apo and Ca(2+)-saturated forms by NMR spectroscopy. The Ca(2+)-binding sites of YCM0-N consist of a pair of helix-loop-helix motifs (EF-hands), in which the loops are linked by a short beta-sheet. The binding of two Ca(2+) causes large rearrangement of the four alpha-helices and exposes the hydrophobic surface as observed for vertebrate calmodulin (CaM). Within the observed overall conformational similarity in the peptide backbone, several significant conformational differences were observed between the two proteins, which originated from the 38% disagreement in amino acid sequences. The beta-sheet in apo YCM0-N is strongly twisted compared with that in the N-domain of CaM, while it turns to the normal more stable conformation on Ca(2+) binding. YCM0-N shows higher cooperativity in Ca(2+) binding than the N-domain of CaM, and the observed conformational change of the beta-sheet is a possible cause of the highly cooperative Ca(2+) binding. The hydrophobic surface on Ca(2+)-saturated YCM0-N appears less flexible due to the replacements of Met51, Met71, and Val55 in the hydrophobic surface of CaM with Leu51, Leu71, and Ile55, which is thought to be one of reasons for the poor activation of target enzymes by yeast CaM.
-===SOLUTION STRUCTURE OF THE APO N-TERMINAL DOMAIN OF YEAST CALMODULIN===
+Solution structures of the N-terminal domain of yeast calmodulin: Ca2+-dependent conformational change and its functional implication.,Ishida H, Takahashi K, Nakashima K, Kumaki Y, Nakata M, Hikichi K, Yazawa M Biochemistry. 2000 Nov 14;39(45):13660-8. PMID:11076504<ref>PMID:11076504</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<!--
+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_11076504}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 1f54" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 11076504 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_11076504}}
-==About this Structure==
-[[1f54]] is a 1 chain structure of [[Calmodulin]] with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F54 OCA].
 ==See Also==
-*[[Calmodulin]]
+*[[Calmodulin 3D structures|Calmodulin 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:11076504</ref><references group="xtra"/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Hikichi, K.]]
+[[Category: Hikichi K]]
-[[Category: Ishida, H.]]
+[[Category: Ishida H]]
-[[Category: Kumaki, Y.]]
+[[Category: Kumaki Y]]
-[[Category: Nakashima, K.]]
+[[Category: Nakashima K]]
-[[Category: Nakata, M.]]
+[[Category: Nakata M]]
-[[Category: Takahashi, K.]]
+[[Category: Takahashi K]]
-[[Category: Yazawa, M.]]
+[[Category: Yazawa M]]
-[[Category: Ef-hand]]
-[[Category: Helix-loop-helix]]
-[[Category: Transport protein]]