1bym: Difference between revisions

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OCA

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 ==SOLUTION STRUCTURES OF THE C-TERMINAL DOMAIN OF DIPHTHERIA TOXIN REPRESSOR==
-<StructureSection load='1bym' size='340' side='right' caption='[[1bym]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='1bym' size='340' side='right'caption='[[1bym]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1bym]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_diphtheriae"_kruse_in_flugge_1886 "bacillus diphtheriae" kruse in flugge 1886]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BYM FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1bym]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebacterium diphtheriae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BYM FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DTXR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1717 "Bacillus diphtheriae" Kruse in Flugge 1886])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bym OCA], [http://pdbe.org/1bym PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bym RCSB], [http://www.ebi.ac.uk/pdbsum/1bym PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1bym ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bym OCA], [https://pdbe.org/1bym PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bym RCSB], [https://www.ebi.ac.uk/pdbsum/1bym PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bym ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/DTXR_CORDI DTXR_CORDI]] Iron-binding repressor of the dipheteria toxin gene expression. May serve as a global regulator of gene expression. Represses ripA under iron excess.
+[https://www.uniprot.org/uniprot/DTXR_CORDI DTXR_CORDI] Iron-binding repressor of the dipheteria toxin gene expression. May serve as a global regulator of gene expression. Represses ripA under iron excess.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/1bym_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/1bym_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 28: / Line 28: @@
 </div>
 <div class="pdbe-citations 1bym" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Diphtheria toxin repressor|Diphtheria toxin repressor]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bacillus diphtheriae kruse in flugge 1886]]
+[[Category: Corynebacterium diphtheriae]]
-[[Category: Caspar, D L.D]]
+[[Category: Large Structures]]
-[[Category: Logan, T M]]
+[[Category: Caspar DLD]]
-[[Category: Murphy, J R]]
+[[Category: Logan TM]]
-[[Category: Twigg, P D]]
+[[Category: Murphy JR]]
-[[Category: Wang, G]]
+[[Category: Twigg PD]]
-[[Category: Wylie, G P]]
+[[Category: Wang G]]
-[[Category: C-terminal domain]]
+[[Category: Wylie GP]]
-[[Category: Dtxr]]
-[[Category: Gene regulation]]
-[[Category: Peptide-binding]]
-[[Category: Prokaryotic sh3 domain]]
-[[Category: Repressor]]
-[[Category: Transcription regulation]]