1zgh: Difference between revisions

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-[[Image:1zgh.gif|left|200px]]
- {{Structure
+==Methionyl-tRNA formyltransferase from Clostridium thermocellum==
-|PDB= 1zgh |SIZE=350|CAPTION= <scene name='initialview01'>1zgh</scene>, resolution 2.050&Aring;
+<StructureSection load='1zgh' size='340' side='right'caption='[[1zgh]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>
+<table><tr><td colspan='2'>[[1zgh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus_ATCC_27405 Acetivibrio thermocellus ATCC 27405]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1xg9 1xg9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZGH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZGH FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00551 Formyl_trans_N], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0223 Fmt]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zgh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zgh OCA], [https://pdbe.org/1zgh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zgh RCSB], [https://www.ebi.ac.uk/pdbsum/1zgh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zgh ProSAT], [https://www.topsan.org/Proteins/SECSG/1zgh TOPSAN]</span></td></tr>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zgh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zgh OCA], [http://www.ebi.ac.uk/pdbsum/1zgh PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1zgh RCSB]</span>
+</table>
-}}
+== Function ==
+[https://www.uniprot.org/uniprot/A3DHJ7_ACET2 A3DHJ7_ACET2]
-'''Methionyl-tRNA formyltransferase from Clostridium thermocellum'''
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-ZGH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum_atcc_27405 Clostridium thermocellum atcc 27405]. This structure supersedes the now removed PDB entry 1XG9. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZGH OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zg/1zgh_consurf.spt"</scriptWhenChecked>
-[[Category: Clostridium thermocellum atcc 27405]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Single protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Chang, J.]]
+  </jmolCheckbox>
-[[Category: Chang, S.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zgh ConSurf].
-[[Category: Chen, L.]]
+<div style="clear:both"></div>
-[[Category: Habel, J.]]
+__TOC__
-[[Category: III, W B.Arendall.]]
+</StructureSection>
-[[Category: Kataeva, I.]]
+[[Category: Acetivibrio thermocellus ATCC 27405]]
-[[Category: Lee, D.]]
+[[Category: Large Structures]]
-[[Category: Lin, D.]]
+[[Category: Arendall III WB]]
-[[Category: Liu, Z.]]
+[[Category: Chang J]]
-[[Category: Richardson, D C.]]
+[[Category: Chang S]]
-[[Category: Richardson, J S.]]
+[[Category: Chen L]]
-[[Category: Rose, J P.]]
+[[Category: Habel J]]
-[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+[[Category: Kataeva I]]
-[[Category: Tempel, W.]]
+[[Category: Lee D]]
-[[Category: Wang, B.]]
+[[Category: Lin D]]
-[[Category: Xu, H.]]
+[[Category: Liu Z]]
-[[Category: Yang, H.]]
+[[Category: Richardson DC]]
-[[Category: Zhao, M.]]
+[[Category: Richardson JS]]
-[[Category: Zhou, W.]]
+[[Category: Rose JP]]
-[[Category: clostridium thermocellum]]
+[[Category: Tempel W]]
-[[Category: methionyl-trna formyltransferase]]
+[[Category: Wang B]]
-[[Category: protein structure initiative]]
+[[Category: Xu H]]
-[[Category: psi]]
+[[Category: Yang H]]
-[[Category: secsg]]
+[[Category: Zhao M]]
-[[Category: southeast collaboratory for structural genomic]]
+[[Category: Zhou W]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:18:07 2008''