1ydm: Difference between revisions

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{{Seed}}
[[Image:1ydm.png|left|200px]]


<!--
==X-Ray structure of Northeast Structural Genomics target SR44==
The line below this paragraph, containing "STRUCTURE_1ydm", creates the "Structure Box" on the page.
<StructureSection load='1ydm' size='340' side='right'caption='[[1ydm]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ydm]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YDM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1ydm|  PDB=1ydm  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ydm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydm OCA], [https://pdbe.org/1ydm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ydm RCSB], [https://www.ebi.ac.uk/pdbsum/1ydm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydm ProSAT], [https://www.topsan.org/Proteins/NESGC/1ydm TOPSAN]</span></td></tr>
 
</table>
===X-Ray structure of Northeast Structural Genomics target SR44===
== Function ==
 
[https://www.uniprot.org/uniprot/YQGN_BACSU YQGN_BACSU]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1YDM is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDM OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1ydm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ydm ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Acton, T.]]
[[Category: Large Structures]]
[[Category: Hunt, J F.]]
[[Category: Acton T]]
[[Category: Jianwei, S.]]
[[Category: Hunt JF]]
[[Category: Kuzin, A P.]]
[[Category: Jianwei S]]
[[Category: Ma, L C.]]
[[Category: Kuzin AP]]
[[Category: Montelione, G.]]
[[Category: Ma L-C]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Montelione G]]
[[Category: Tong, L.]]
[[Category: Tong L]]
[[Category: Vorobiev, S.]]
[[Category: Vorobiev S]]
[[Category: Xia, R.]]
[[Category: Xia R]]
[[Category: Nesg]]
[[Category: Northeast structural genomic]]
[[Category: Northeast structural genomics consortium]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Sr44]]
[[Category: X-ray]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:29:06 2008''

Latest revision as of 11:02, 15 May 2024

X-Ray structure of Northeast Structural Genomics target SR44X-Ray structure of Northeast Structural Genomics target SR44

Structural highlights

1ydm is a 3 chain structure with sequence from Bacillus subtilis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.5Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

YQGN_BACSU

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1ydm, resolution 2.50Å

Drag the structure with the mouse to rotate

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OCA
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