1ydm: Difference between revisions
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==X-Ray structure of Northeast Structural Genomics target SR44== | ==X-Ray structure of Northeast Structural Genomics target SR44== | ||
<StructureSection load='1ydm' size='340' side='right' caption='[[1ydm]], [[Resolution|resolution]] 2.50Å' scene=''> | <StructureSection load='1ydm' size='340' side='right'caption='[[1ydm]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1ydm]] is a 3 chain structure with sequence from [ | <table><tr><td colspan='2'>[[1ydm]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YDM FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ydm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydm OCA], [https://pdbe.org/1ydm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ydm RCSB], [https://www.ebi.ac.uk/pdbsum/1ydm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydm ProSAT], [https://www.topsan.org/Proteins/NESGC/1ydm TOPSAN]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/YQGN_BACSU YQGN_BACSU] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1ydm_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1ydm_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ydm ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Bacillus subtilis]] | [[Category: Bacillus subtilis]] | ||
[[Category: Acton | [[Category: Large Structures]] | ||
[[Category: Hunt | [[Category: Acton T]] | ||
[[Category: Jianwei | [[Category: Hunt JF]] | ||
[[Category: Kuzin | [[Category: Jianwei S]] | ||
[[Category: Ma | [[Category: Kuzin AP]] | ||
[[Category: Montelione | [[Category: Ma L-C]] | ||
[[Category: Montelione G]] | |||
[[Category: Tong | [[Category: Tong L]] | ||
[[Category: Vorobiev | [[Category: Vorobiev S]] | ||
[[Category: Xia | [[Category: Xia R]] | ||
Latest revision as of 11:02, 15 May 2024
X-Ray structure of Northeast Structural Genomics target SR44X-Ray structure of Northeast Structural Genomics target SR44
Structural highlights
FunctionEvolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. |
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