2n0t: Difference between revisions
No edit summary |
No edit summary |
||
| (6 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
The | ==Structural ensemble of the enzyme cyclophilin reveals an orchestrated mode of action at atomic resolution== | ||
<StructureSection load='2n0t' size='340' side='right'caption='[[2n0t]]' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2n0t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2N0T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2N0T FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2n0t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2n0t OCA], [https://pdbe.org/2n0t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2n0t RCSB], [https://www.ebi.ac.uk/pdbsum/2n0t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2n0t ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/PPIA_HUMAN PPIA_HUMAN] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
For enzyme activity, an exact structural and motional orchestration of the active site and its surroundings is believed to be key. In order to reveal such possible phenomena at atomic resolution on the basis of experimental evidence, an experimental restraint driven two-state ensemble of the prototypical enzyme cyclophilin was determined by using a recently introduced exact NOE approach. The ensemble description reveals the presence of an open and a closed state of cyclophilin, which is indicative of large-scale correlated motion. In the open state, the catalytic site is preorganized for catalysis, thus suggesting the mechanism of action to be conformational sampling, while the ligand-binding loop appears to act through an induced fit mechanism. This finding is supported by affinity measurements of a cyclophilin designed to be more open. Overall, more than 60-70 % of the side-chain conformations of cyclophilin appear to be correlated. | |||
A Structural Ensemble for the Enzyme Cyclophilin Reveals an Orchestrated Mode of Action at Atomic Resolution.,Chi CN, Vogeli B, Bibow S, Strotz D, Orts J, Guntert P, Riek R Angew Chem Int Ed Engl. 2015 Aug 10. doi: 10.1002/anie.201503698. PMID:26265096<ref>PMID:26265096</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: | <div class="pdbe-citations 2n0t" style="background-color:#fffaf0;"></div> | ||
[[Category: Bibow | |||
[[Category: Guntert | ==See Also== | ||
[[Category: | *[[Cyclophilin 3D structures|Cyclophilin 3D structures]] | ||
[[Category: Riek | == References == | ||
[[Category: | <references/> | ||
[[Category: | __TOC__ | ||
</StructureSection> | |||
[[Category: Homo sapiens]] | |||
[[Category: Large Structures]] | |||
[[Category: Bibow S]] | |||
[[Category: Chi CN]] | |||
[[Category: Guntert P]] | |||
[[Category: Orts J]] | |||
[[Category: Riek R]] | |||
[[Category: Strotz D]] | |||
[[Category: Voegeli B]] | |||
Latest revision as of 09:13, 15 May 2024
Structural ensemble of the enzyme cyclophilin reveals an orchestrated mode of action at atomic resolutionStructural ensemble of the enzyme cyclophilin reveals an orchestrated mode of action at atomic resolution
Structural highlights
FunctionPPIA_HUMAN PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Publication Abstract from PubMedFor enzyme activity, an exact structural and motional orchestration of the active site and its surroundings is believed to be key. In order to reveal such possible phenomena at atomic resolution on the basis of experimental evidence, an experimental restraint driven two-state ensemble of the prototypical enzyme cyclophilin was determined by using a recently introduced exact NOE approach. The ensemble description reveals the presence of an open and a closed state of cyclophilin, which is indicative of large-scale correlated motion. In the open state, the catalytic site is preorganized for catalysis, thus suggesting the mechanism of action to be conformational sampling, while the ligand-binding loop appears to act through an induced fit mechanism. This finding is supported by affinity measurements of a cyclophilin designed to be more open. Overall, more than 60-70 % of the side-chain conformations of cyclophilin appear to be correlated. A Structural Ensemble for the Enzyme Cyclophilin Reveals an Orchestrated Mode of Action at Atomic Resolution.,Chi CN, Vogeli B, Bibow S, Strotz D, Orts J, Guntert P, Riek R Angew Chem Int Ed Engl. 2015 Aug 10. doi: 10.1002/anie.201503698. PMID:26265096[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
|
| ||||||||||||||||