5abh: Difference between revisions

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OCA

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 ==Structure of GH84 with ligand==
-<StructureSection load='5abh' size='340' side='right' caption='[[5abh]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+<StructureSection load='5abh' size='340' side='right'caption='[[5abh]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5abh]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ABH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ABH FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5abh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ABH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ABH FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=YWN:2-[(2R,3S,4R,5R)-5-(HYDROXYMETHYL)-3,4-BIS(OXIDANYL)-1-PENTYL-PYRROLIDIN-2-YL]-N-METHYL-ETHANAMIDE'>YWN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5abe|5abe]], [[5abf|5abf]], [[5abg|5abg]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=YWN:2-[(2R,3S,4R,5R)-5-(HYDROXYMETHYL)-3,4-BIS(OXIDANYL)-1-PENTYL-PYRROLIDIN-2-YL]-N-METHYL-ETHANAMIDE'>YWN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5abh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5abh OCA], [http://pdbe.org/5abh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5abh RCSB], [http://www.ebi.ac.uk/pdbsum/5abh PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5abh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5abh OCA], [https://pdbe.org/5abh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5abh RCSB], [https://www.ebi.ac.uk/pdbsum/5abh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5abh ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/OGA_BACTN OGA_BACTN]] Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins.
+[https://www.uniprot.org/uniprot/OGA_BACTN OGA_BACTN] Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 18: / Line 19: @@
 </div>
 <div class="pdbe-citations 5abh" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[O-GlcNAcase|O-GlcNAcase]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bergeron-Brlek, M]]
+[[Category: Bacteroides thetaiotaomicron]]
-[[Category: Britton, R]]
+[[Category: Large Structures]]
-[[Category: Cekic, N]]
+[[Category: Bergeron-Brlek M]]
-[[Category: Chan, S]]
+[[Category: Britton R]]
-[[Category: Davies, G J]]
+[[Category: Cekic N]]
-[[Category: Goodwin-Tindall, J]]
+[[Category: Chan S]]
-[[Category: Roth, C]]
+[[Category: Davies GJ]]
-[[Category: Shan, X]]
+[[Category: Goodwin-Tindall J]]
-[[Category: Varghese, V]]
+[[Category: Roth C]]
-[[Category: Vocadlo, D J]]
+[[Category: Shan X]]
-[[Category: Zandberg, W F]]
+[[Category: Varghese V]]
-[[Category: Hydrolase]]
+[[Category: Vocadlo DJ]]
-[[Category: Inhibitor]]
+[[Category: Zandberg WF]]
-[[Category: Tim-barrel]]