4wwm: Difference between revisions
New page: '''Unreleased structure''' The entry 4wwm is ON HOLD Authors: Bray, S.M., Anjum, S.R., Blackwood, J.K., Kilkenny, M.L., Coelho, M.A., Foster, B.M., Pellegrini, L., Robinson, N.P. Descr... |
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==X-ray crystal structure of Sulfolobus solfataricus Urm1== | |||
<StructureSection load='4wwm' size='340' side='right'caption='[[4wwm]], [[Resolution|resolution]] 2.20Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[4wwm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus_98/2 Saccharolobus solfataricus 98/2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WWM FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wwm OCA], [https://pdbe.org/4wwm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wwm RCSB], [https://www.ebi.ac.uk/pdbsum/4wwm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wwm ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/D0KRX8_SACS9 D0KRX8_SACS9] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
In eukaryotes, the covalent attachment of ubiquitin chains directs substrates to the proteasome for degradation. Recently, ubiquitin-like modifications have also been described in the archaeal domain of life. It has subsequently been hypothesized that ubiquitin-like proteasomal degradation might also operate in these microbes, since all archaeal species utilize homologues of the eukaryotic proteasome. Here we perform a structural and biochemical analysis of a ubiquitin-like modification pathway in the archaeon Sulfolobus acidocaldarius. We reveal that this modifier is homologous to the eukaryotic ubiquitin-related modifier Urm1, considered to be a close evolutionary relative of the progenitor of all ubiquitin-like proteins. Furthermore we demonstrate that urmylated substrates are recognized and processed by the archaeal proteasome, by virtue of a direct interaction with the modifier. Thus, the regulation of protein stability by Urm1 and the proteasome in archaea is likely representative of an ancient pathway from which eukaryotic ubiquitin-mediated proteolysis has evolved. | |||
Involvement of a eukaryotic-like ubiquitin-related modifier in the proteasome pathway of the archaeon Sulfolobus acidocaldarius.,Anjum RS, Bray SM, Blackwood JK, Kilkenny ML, Coelho MA, Foster BM, Li S, Howard JA, Pellegrini L, Albers SV, Deery MJ, Robinson NP Nat Commun. 2015 Sep 8;6:8163. doi: 10.1038/ncomms9163. PMID:26348592<ref>PMID:26348592</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 4wwm" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Saccharolobus solfataricus 98/2]] | |||
[[Category: Anjum SR]] | |||
[[Category: Blackwood JK]] | |||
[[Category: Bray SM]] | |||
[[Category: Coelho MA]] | |||
[[Category: Foster BM]] | |||
[[Category: Kilkenny ML]] | |||
[[Category: Pellegrini L]] | |||
[[Category: Robinson NP]] | |||